Wall clock time and date at job start Mon Mar 30 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99992 * 2 1 4 4 H 1.48503 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47108 * 299.99489 * 3 2 1 6 6 H 1.48494 * 109.47170 * 59.99560 * 3 2 1 7 7 C 1.37877 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47389 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47010 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47081 * 179.97438 * 11 10 9 13 13 O 1.21282 * 120.00165 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00030 * 180.02562 * 12 11 10 15 15 C 1.47976 * 126.93991 * 179.70940 * 14 12 11 16 16 C 1.54924 * 102.75239 * 159.02925 * 15 14 12 17 17 O 1.44639 * 102.34541 * 36.12057 * 16 15 14 18 18 C 1.43720 * 105.58162 * 322.45846 * 17 16 15 19 19 H 0.96996 * 119.99907 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47407 * 59.98995 * 9 7 2 21 21 H 1.09005 * 109.46594 * 299.99941 * 9 7 2 22 22 H 1.08996 * 109.47372 * 59.99702 * 10 9 7 23 23 H 1.08999 * 109.46768 * 299.99427 * 10 9 7 24 24 H 1.09004 * 109.46928 * 60.00069 * 11 10 9 25 25 H 1.08997 * 109.47160 * 300.00450 * 11 10 9 26 26 H 1.09005 * 110.75499 * 277.34699 * 15 14 12 27 27 H 1.09005 * 110.75285 * 40.71372 * 15 14 12 28 28 H 1.09002 * 110.83279 * 277.90503 * 16 15 14 29 29 H 1.09004 * 110.82972 * 154.33123 * 16 15 14 30 30 H 1.09002 * 109.71979 * 265.42020 * 18 17 16 31 31 H 1.08998 * 109.68054 * 144.84882 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4596 -6.1325 0.0005 13 8 3.6521 -5.9109 0.0001 14 7 2.0104 -7.4032 0.0004 15 6 2.8291 -8.6359 -0.0062 16 6 1.8457 -9.7024 0.5377 17 8 0.5858 -9.2817 -0.0346 18 6 0.6064 -7.8451 0.0003 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5572 -0.8896 21 1 0.6241 -2.5567 0.8904 22 1 2.8721 -3.6043 0.8904 23 1 2.8719 -3.6043 -0.8895 24 1 0.8534 -5.0451 -0.8886 25 1 0.8539 -5.0446 0.8913 26 1 3.1461 -8.8836 -1.0192 27 1 3.6898 -8.5314 0.6545 28 1 1.8058 -9.6734 1.6266 29 1 2.1188 -10.6970 0.1850 30 1 0.1097 -7.4920 0.9041 31 1 0.0963 -7.4492 -0.8778 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597722649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:56 Heat of formation + Delta-G solvation = -85.437577 kcal Electronic energy + Delta-G solvation = -13892.205509 eV Core-core repulsion = 11366.635976 eV Total energy + Delta-G solvation = -2525.569534 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40513 -38.41963 -34.24678 -33.90427 -32.08913 -30.38929 -27.86482 -25.49092 -23.98120 -22.79293 -20.42612 -19.42003 -17.24781 -17.20471 -16.24013 -15.71658 -15.19676 -14.82028 -14.64251 -14.34335 -13.74747 -13.28976 -12.86054 -12.54928 -12.23729 -11.91669 -11.69528 -11.39173 -10.83553 -10.62835 -10.52413 -10.31648 -9.83205 -9.69830 -9.31713 -9.03148 -8.85015 -8.32978 -5.98342 -3.99791 2.75717 2.78692 3.33598 3.40936 3.46639 3.48310 4.39543 4.48557 4.56818 4.72775 5.01090 5.12663 5.27459 5.30869 5.37955 5.46230 5.59599 5.65637 5.73100 6.17941 6.46617 6.68701 6.89408 7.12550 7.37194 7.69789 7.81763 8.02098 8.23723 8.45870 9.07434 9.64386 11.13236 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.076532 B = 0.005140 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.770756 B = 5446.428135 C = 5758.179575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.134 4.134 12 C 0.538 3.462 13 O -0.529 6.529 14 N -0.653 5.653 15 C 0.070 3.930 16 C 0.040 3.960 17 O -0.372 6.372 18 C 0.267 3.733 19 H 0.259 0.741 20 H 0.016 0.984 21 H 0.016 0.984 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.738 -18.016 0.816 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.174 4.174 12 C 0.329 3.671 13 O -0.403 6.403 14 N -0.396 5.396 15 C -0.052 4.052 16 C -0.037 4.037 17 O -0.289 6.289 18 C 0.106 3.894 19 H 0.069 0.931 20 H 0.035 0.965 21 H 0.035 0.965 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.090 0.910 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.086 -17.810 0.737 17.858 hybrid contribution 0.452 0.944 0.066 1.048 sum 1.538 -16.866 0.803 16.955 Atomic orbital electron populations 1.69969 1.06045 1.26459 1.51247 1.25017 0.94852 0.99268 0.95357 0.86534 0.80229 0.83734 0.77528 1.19681 1.21027 1.21036 1.21303 0.93237 0.90967 1.50101 0.92502 1.19141 0.93952 0.91422 0.97210 1.21478 0.98718 0.91366 1.01820 1.21897 0.97978 0.93625 1.03912 1.20964 0.90289 0.81466 0.74363 1.90700 1.17292 1.83477 1.48871 1.49522 1.07686 1.06110 1.76290 1.22992 0.95749 0.84054 1.02436 1.23908 0.82289 0.98781 0.98736 1.89149 1.37341 1.19101 1.83261 1.23017 0.83501 0.80376 1.02482 0.93104 0.96528 0.96529 0.92593 0.92578 0.89133 0.89150 0.90419 0.89095 0.90864 0.87373 0.90983 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -2.07 4.44 -26.73 -0.12 -2.19 16 11 C -0.13 -2.24 4.98 -27.88 -0.14 -2.38 16 12 C 0.54 8.96 7.89 -10.99 -0.09 8.87 16 13 O -0.53 -10.78 16.38 5.56 0.09 -10.68 16 14 N -0.65 -8.53 3.38 -175.85 -0.59 -9.12 16 15 C 0.07 0.74 7.28 -2.22 -0.02 0.72 16 16 C 0.04 0.32 7.89 38.17 0.30 0.62 16 17 O -0.37 -3.93 11.63 -35.23 -0.41 -4.34 16 18 C 0.27 2.83 7.47 60.23 0.45 3.28 16 19 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 20 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 23 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 24 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 25 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 268.70 15.07 4.05 4.05 Total: -1.00 -33.50 268.70 -5.92 -39.42 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: -4.61 Total: -5.51 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -0.16 Total: -4.48 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.14 Total: -35.44 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.32 Total: -15.02 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.50 -5.92 -39.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597722649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.020 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds