Wall clock time and date at job start Mon Mar 30 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99992 * 2 1 4 4 H 1.48503 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47108 * 299.99489 * 3 2 1 6 6 H 1.48494 * 109.47170 * 59.99560 * 3 2 1 7 7 C 1.37877 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47389 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47010 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47081 * 179.97438 * 11 10 9 13 13 O 1.21282 * 120.00165 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00030 * 180.02562 * 12 11 10 15 15 C 1.47976 * 126.93991 * 179.70940 * 14 12 11 16 16 C 1.54924 * 102.75239 * 159.02925 * 15 14 12 17 17 O 1.44639 * 102.34541 * 36.12057 * 16 15 14 18 18 C 1.43720 * 105.58162 * 322.45846 * 17 16 15 19 19 H 0.96996 * 119.99907 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47407 * 59.98995 * 9 7 2 21 21 H 1.09005 * 109.46594 * 299.99941 * 9 7 2 22 22 H 1.08996 * 109.47372 * 59.99702 * 10 9 7 23 23 H 1.08999 * 109.46768 * 299.99427 * 10 9 7 24 24 H 1.09004 * 109.46928 * 60.00069 * 11 10 9 25 25 H 1.08997 * 109.47160 * 300.00450 * 11 10 9 26 26 H 1.09005 * 110.75499 * 277.34699 * 15 14 12 27 27 H 1.09005 * 110.75285 * 40.71372 * 15 14 12 28 28 H 1.09002 * 110.83279 * 277.90503 * 16 15 14 29 29 H 1.09004 * 110.82972 * 154.33123 * 16 15 14 30 30 H 1.09002 * 109.71979 * 265.42020 * 18 17 16 31 31 H 1.08998 * 109.68054 * 144.84882 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4596 -6.1325 0.0005 13 8 3.6521 -5.9109 0.0001 14 7 2.0104 -7.4032 0.0004 15 6 2.8291 -8.6359 -0.0062 16 6 1.8457 -9.7024 0.5377 17 8 0.5858 -9.2817 -0.0346 18 6 0.6064 -7.8451 0.0003 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5572 -0.8896 21 1 0.6241 -2.5567 0.8904 22 1 2.8721 -3.6043 0.8904 23 1 2.8719 -3.6043 -0.8895 24 1 0.8534 -5.0451 -0.8886 25 1 0.8539 -5.0446 0.8913 26 1 3.1461 -8.8836 -1.0192 27 1 3.6898 -8.5314 0.6545 28 1 1.8058 -9.6734 1.6266 29 1 2.1188 -10.6970 0.1850 30 1 0.1097 -7.4920 0.9041 31 1 0.0963 -7.4492 -0.8778 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597722649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:56 Heat of formation + Delta-G solvation = -109.517483 kcal Electronic energy + Delta-G solvation = -13893.249692 eV Core-core repulsion = 11366.635976 eV Total energy + Delta-G solvation = -2526.613717 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.42401 -39.56397 -36.15821 -34.95075 -34.03763 -31.36246 -29.55752 -26.72469 -25.50559 -23.85838 -22.12222 -20.66875 -18.65135 -18.20163 -18.04284 -16.87102 -16.50694 -16.20834 -16.03481 -15.48291 -15.11817 -14.43444 -14.17608 -13.85512 -13.76522 -13.52204 -13.11650 -12.65910 -12.54071 -12.51616 -12.35978 -11.58518 -11.51046 -11.28183 -11.05055 -10.92107 -10.54509 -9.88819 -8.20312 -6.30131 1.39871 1.40358 1.47869 1.53955 1.72911 2.41953 2.74892 3.13001 3.48648 3.69886 4.00161 4.08169 4.17282 4.22278 4.39006 4.43405 4.64196 4.71867 4.73245 4.90328 4.94164 5.07299 5.18341 5.53526 5.64750 5.74384 5.86047 6.22046 6.29432 6.85282 6.99137 7.38716 8.91457 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.076532 B = 0.005140 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.770756 B = 5446.428135 C = 5758.179575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.025 3.975 10 C -0.083 4.083 11 C -0.126 4.126 12 C 0.541 3.459 13 O -0.576 6.576 14 N -0.650 5.650 15 C 0.062 3.938 16 C 0.047 3.953 17 O -0.381 6.381 18 C 0.262 3.738 19 H 0.265 0.735 20 H 0.002 0.998 21 H 0.003 0.997 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 -18.875 0.956 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.069 0.931 9 C -0.012 4.012 10 C -0.121 4.121 11 C -0.165 4.165 12 C 0.332 3.668 13 O -0.455 6.455 14 N -0.391 5.391 15 C -0.060 4.060 16 C -0.030 4.030 17 O -0.298 6.298 18 C 0.102 3.898 19 H 0.073 0.927 20 H 0.021 0.979 21 H 0.021 0.979 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.155 0.845 30 H 0.105 0.895 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.819 -18.721 0.878 18.759 hybrid contribution 0.491 1.130 0.023 1.232 sum 1.310 -17.591 0.901 17.663 Atomic orbital electron populations 1.70066 1.07487 1.27740 1.51640 1.25887 0.95805 1.03025 0.94668 0.85451 0.78889 0.79030 0.78002 1.19249 1.20089 1.20071 1.21715 0.93352 0.92788 1.50667 0.93063 1.19028 0.94187 0.92269 0.95700 1.21183 0.97710 0.92751 1.00469 1.21716 0.97693 0.91234 1.05866 1.20698 0.89333 0.82576 0.74224 1.90681 1.18931 1.84398 1.51516 1.49450 1.09565 1.05759 1.74312 1.23235 0.96233 0.83599 1.02967 1.24079 0.80392 0.99110 0.99372 1.89153 1.38275 1.18750 1.83659 1.23247 0.81929 0.80771 1.03845 0.92650 0.97930 0.97869 0.93904 0.93987 0.87230 0.87126 0.89993 0.89388 0.89710 0.84469 0.89458 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.33 4.97 29.85 0.15 1.48 16 10 C -0.08 -3.64 4.44 30.59 0.14 -3.50 16 11 C -0.13 -4.08 4.98 29.85 0.15 -3.93 16 12 C 0.54 17.62 7.89 87.66 0.69 18.31 16 13 O -0.58 -23.71 16.38 -3.04 -0.05 -23.76 16 14 N -0.65 -15.90 3.38 -928.17 -3.14 -19.04 16 15 C 0.06 1.18 7.28 86.75 0.63 1.81 16 16 C 0.05 0.61 7.89 72.64 0.57 1.19 16 17 O -0.38 -6.97 11.63 -148.98 -1.73 -8.70 16 18 C 0.26 4.88 7.47 127.63 0.95 5.83 16 19 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 20 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 21 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 22 H 0.04 1.95 8.10 -2.39 -0.02 1.94 16 23 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 24 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 25 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 26 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -72.08 268.70 2.46 -69.61 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: 1.09 Total: 0.65 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 3.98 Total: -9.99 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -2.85 Total: -74.94 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -1.78 Total: -32.46 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -72.08 2.46 -69.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597722649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.904 kcal (2) G-P(sol) polarization free energy of solvation -72.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds