Wall clock time and date at job start Mon Mar 30 2020 02:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86796 * 120.00417 * 2 1 4 4 H 1.48501 * 109.47383 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46965 * 300.00002 * 3 2 1 6 6 H 1.48500 * 109.47439 * 60.00014 * 3 2 1 7 7 C 1.40049 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00141 * 179.97438 * 7 2 1 9 9 C 1.46377 * 120.00003 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00208 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00029 * 180.02562 * 9 7 2 12 12 C 1.46501 * 120.00275 * 179.97438 * 11 9 7 13 13 H 1.09006 * 109.46871 * 326.37632 * 12 11 9 14 14 C 1.53005 * 109.47248 * 86.37021 * 12 11 9 15 15 O 1.42901 * 109.46791 * 65.00719 * 14 12 11 16 16 C 1.52994 * 109.47577 * 206.37694 * 12 11 9 17 17 C 1.53784 * 113.61823 * 175.93143 * 16 12 11 18 18 C 1.53779 * 87.08030 * 220.01885 * 17 16 12 19 19 C 1.53778 * 87.17742 * 25.38717 * 18 17 16 20 20 H 0.97003 * 119.99516 * 359.97438 * 1 2 3 21 21 H 0.96999 * 120.00247 * 359.97438 * 11 9 7 22 22 H 1.08998 * 109.46750 * 185.00453 * 14 12 11 23 23 H 1.08998 * 109.47109 * 305.00448 * 14 12 11 24 24 H 0.96696 * 114.00235 * 180.02562 * 15 14 12 25 25 H 1.09002 * 112.85117 * 307.12916 * 16 12 11 26 26 H 1.08997 * 113.61525 * 105.46663 * 17 16 12 27 27 H 1.09001 * 113.60836 * 334.56480 * 17 16 12 28 28 H 1.08999 * 113.61559 * 139.98051 * 18 17 16 29 29 H 1.09006 * 113.61082 * 270.79429 * 18 17 16 30 30 H 1.09009 * 113.61131 * 89.15597 * 19 18 17 31 31 H 1.08993 * 113.62042 * 220.06149 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.7008 1.3462 -0.0006 5 1 1.8821 2.3963 -1.2125 6 1 1.8822 2.3964 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2749 -2.4805 -0.0005 10 8 0.0580 -2.4805 0.0004 11 7 1.9487 -3.6477 -0.0005 12 6 1.2162 -4.9165 0.0000 13 1 0.2936 -4.8031 0.5694 14 6 0.8815 -5.3128 -1.4394 15 8 2.0906 -5.5748 -2.1546 16 6 2.0805 -6.0042 0.6408 17 6 1.3639 -7.3577 0.7808 18 6 2.0377 -7.4830 2.1574 19 6 2.1063 -5.9469 2.1790 20 1 -0.4849 0.8401 0.0004 21 1 2.9187 -3.6478 -0.0009 22 1 0.2608 -6.2088 -1.4345 23 1 0.3416 -4.4994 -1.9241 24 1 1.9543 -5.8320 -3.0767 25 1 3.0702 -6.0787 0.1900 26 1 1.6982 -8.1051 0.0613 27 1 0.2784 -7.2736 0.8320 28 1 1.3874 -7.9019 2.9253 29 1 3.0157 -7.9633 2.1227 30 1 1.2240 -5.4765 2.6133 31 1 3.0390 -5.5571 2.5868 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597921589.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:52 Heat of formation + Delta-G solvation = -80.369156 kcal Electronic energy + Delta-G solvation = -14524.229006 eV Core-core repulsion = 11998.879256 eV Total energy + Delta-G solvation = -2525.349750 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.11574 -36.93537 -35.93840 -32.99198 -32.12671 -28.84401 -25.99618 -25.33297 -24.66487 -21.26171 -19.36618 -19.13049 -17.14760 -16.74336 -15.50096 -15.28213 -14.92221 -14.15587 -13.90216 -13.42036 -13.15075 -12.26778 -12.21423 -12.16470 -11.80969 -11.37940 -11.10078 -10.95636 -10.83953 -10.43478 -10.19928 -10.16663 -9.98710 -9.82052 -9.45287 -8.81938 -7.55410 -7.38181 -6.14139 -4.58395 3.15476 3.23677 3.28558 4.14206 4.59839 4.69323 4.88339 4.90899 5.00742 5.09559 5.31444 5.66782 5.78034 5.88229 5.90806 5.97115 6.01560 6.06385 6.14374 6.28997 6.40407 6.54035 6.58454 6.89531 7.48346 8.02878 8.04280 8.22286 8.42169 9.07725 9.63657 10.65161 10.84710 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043077 B = 0.007854 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.849725 B = 3564.124977 C = 3779.915561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.586 6.586 11 N -0.752 5.752 12 C 0.169 3.831 13 H 0.086 0.914 14 C 0.066 3.934 15 O -0.567 6.567 16 C -0.106 4.106 17 C -0.132 4.132 18 C -0.143 4.143 19 C -0.134 4.134 20 H 0.266 0.734 21 H 0.382 0.618 22 H 0.036 0.964 23 H 0.050 0.950 24 H 0.366 0.634 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.083 -11.001 0.186 11.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.470 6.470 11 N -0.405 5.405 12 C 0.062 3.938 13 H 0.104 0.896 14 C -0.013 4.013 15 O -0.370 6.370 16 C -0.125 4.125 17 C -0.170 4.170 18 C -0.181 4.181 19 C -0.171 4.171 20 H 0.077 0.923 21 H 0.213 0.787 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.211 0.789 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.263 -10.724 0.785 11.237 hybrid contribution 0.590 0.684 -0.630 1.101 sum 3.853 -10.040 0.156 10.756 Atomic orbital electron populations 1.70038 1.07024 1.26986 1.35834 1.25704 0.94598 1.00243 0.92643 0.86344 0.80558 0.81867 0.78138 1.18793 1.20229 1.20211 1.20940 0.93631 0.89486 1.54065 0.91469 1.18214 0.87162 0.82583 0.76047 1.90580 1.14120 1.86957 1.55310 1.46011 1.08595 1.04207 1.81728 1.20583 0.96156 0.84816 0.92244 0.89629 1.22753 0.85947 0.97944 0.94651 1.86485 1.32270 1.91563 1.26729 1.22693 1.00060 0.94405 0.95301 1.22858 0.99877 0.97311 0.96947 1.22814 1.00541 0.97148 0.97552 1.22947 1.02320 0.95338 0.96528 0.92296 0.78706 0.94619 0.93186 0.78912 0.88917 0.91848 0.90352 0.91942 0.90649 0.90095 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.39 11.83 55.55 0.66 -22.73 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.53 29.56 -169.99 -5.02 15.51 16 4 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.73 9.54 -35.63 -0.34 -16.07 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 9 C 0.56 16.05 7.73 -12.99 -0.10 15.95 16 10 O -0.59 -19.01 14.66 5.20 0.08 -18.93 16 11 N -0.75 -17.42 5.01 -55.21 -0.28 -17.69 16 12 C 0.17 3.33 2.15 -67.93 -0.15 3.18 16 13 H 0.09 1.88 7.43 -51.93 -0.39 1.49 16 14 C 0.07 1.20 6.63 37.16 0.25 1.45 16 15 O -0.57 -9.36 12.96 -35.23 -0.46 -9.82 16 16 C -0.11 -1.66 2.88 -89.72 -0.26 -1.92 16 17 C -0.13 -1.73 6.97 -25.92 -0.18 -1.91 16 18 C -0.14 -1.74 8.08 -25.92 -0.21 -1.95 16 19 C -0.13 -1.98 7.65 -25.83 -0.20 -2.18 16 20 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 21 H 0.38 8.20 8.60 -40.82 -0.35 7.85 16 22 H 0.04 0.55 7.74 -51.93 -0.40 0.15 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.37 4.33 9.12 45.56 0.42 4.75 16 25 H 0.09 1.49 7.95 -51.93 -0.41 1.08 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.30 8.03 -51.92 -0.42 0.88 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 266.27 15.07 4.01 4.01 Total: -1.00 -34.31 266.27 -5.93 -40.23 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -3.63 Total: 10.49 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.28 Total: -1.07 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.38 Total: -40.42 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.38 Total: -28.75 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.31 -5.93 -40.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597921589.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.135 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds