Wall clock time and date at job start Mon Mar 30 2020 02:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86796 * 120.00417 * 2 1 4 4 H 1.48501 * 109.47383 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46965 * 300.00002 * 3 2 1 6 6 H 1.48500 * 109.47439 * 60.00014 * 3 2 1 7 7 C 1.40049 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00141 * 179.97438 * 7 2 1 9 9 C 1.46377 * 120.00003 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00208 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00029 * 180.02562 * 9 7 2 12 12 C 1.46501 * 120.00275 * 179.97438 * 11 9 7 13 13 H 1.09006 * 109.46871 * 326.37632 * 12 11 9 14 14 C 1.53005 * 109.47248 * 86.37021 * 12 11 9 15 15 O 1.42901 * 109.46791 * 65.00719 * 14 12 11 16 16 C 1.52994 * 109.47577 * 206.37694 * 12 11 9 17 17 C 1.53784 * 113.61823 * 175.93143 * 16 12 11 18 18 C 1.53779 * 87.08030 * 220.01885 * 17 16 12 19 19 C 1.53778 * 87.17742 * 25.38717 * 18 17 16 20 20 H 0.97003 * 119.99516 * 359.97438 * 1 2 3 21 21 H 0.96999 * 120.00247 * 359.97438 * 11 9 7 22 22 H 1.08998 * 109.46750 * 185.00453 * 14 12 11 23 23 H 1.08998 * 109.47109 * 305.00448 * 14 12 11 24 24 H 0.96696 * 114.00235 * 180.02562 * 15 14 12 25 25 H 1.09002 * 112.85117 * 307.12916 * 16 12 11 26 26 H 1.08997 * 113.61525 * 105.46663 * 17 16 12 27 27 H 1.09001 * 113.60836 * 334.56480 * 17 16 12 28 28 H 1.08999 * 113.61559 * 139.98051 * 18 17 16 29 29 H 1.09006 * 113.61082 * 270.79429 * 18 17 16 30 30 H 1.09009 * 113.61131 * 89.15597 * 19 18 17 31 31 H 1.08993 * 113.62042 * 220.06149 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.7008 1.3462 -0.0006 5 1 1.8821 2.3963 -1.2125 6 1 1.8822 2.3964 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2749 -2.4805 -0.0005 10 8 0.0580 -2.4805 0.0004 11 7 1.9487 -3.6477 -0.0005 12 6 1.2162 -4.9165 0.0000 13 1 0.2936 -4.8031 0.5694 14 6 0.8815 -5.3128 -1.4394 15 8 2.0906 -5.5748 -2.1546 16 6 2.0805 -6.0042 0.6408 17 6 1.3639 -7.3577 0.7808 18 6 2.0377 -7.4830 2.1574 19 6 2.1063 -5.9469 2.1790 20 1 -0.4849 0.8401 0.0004 21 1 2.9187 -3.6478 -0.0009 22 1 0.2608 -6.2088 -1.4345 23 1 0.3416 -4.4994 -1.9241 24 1 1.9543 -5.8320 -3.0767 25 1 3.0702 -6.0787 0.1900 26 1 1.6982 -8.1051 0.0613 27 1 0.2784 -7.2736 0.8320 28 1 1.3874 -7.9019 2.9253 29 1 3.0157 -7.9633 2.1227 30 1 1.2240 -5.4765 2.6133 31 1 3.0390 -5.5571 2.5868 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597921589.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:52 Heat of formation + Delta-G solvation = -107.918768 kcal Electronic energy + Delta-G solvation = -14525.423647 eV Core-core repulsion = 11998.879256 eV Total energy + Delta-G solvation = -2526.544391 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.53845 -38.80700 -37.39929 -34.94745 -34.23909 -30.58821 -28.03566 -26.57288 -25.90158 -22.93791 -21.19667 -20.49182 -19.05877 -18.20531 -17.40051 -16.97448 -16.21711 -15.90976 -15.57275 -14.89727 -14.77239 -14.23032 -13.91806 -13.32843 -13.24552 -13.13010 -12.80372 -12.63512 -12.40427 -12.34820 -11.97847 -11.41353 -11.21190 -11.06250 -10.93334 -10.88666 -9.81818 -9.36989 -8.28655 -6.84594 1.38962 1.39108 1.57101 2.24573 2.47786 3.07554 3.48348 3.62858 3.77022 3.82530 3.91628 4.06569 4.35099 4.41783 4.57273 4.64225 4.86964 4.89289 4.96785 5.08287 5.13372 5.16047 5.32093 5.39729 5.66486 5.90875 6.25109 6.36068 6.87413 6.92312 7.58794 8.51229 8.68868 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043077 B = 0.007854 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.849725 B = 3564.124977 C = 3779.915561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.997 3.003 4 H -0.249 1.249 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.541 3.459 10 O -0.633 6.633 11 N -0.741 5.741 12 C 0.162 3.838 13 H 0.055 0.945 14 C 0.078 3.922 15 O -0.572 6.572 16 C -0.104 4.104 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.143 4.143 20 H 0.274 0.726 21 H 0.391 0.609 22 H 0.070 0.930 23 H 0.009 0.991 24 H 0.389 0.611 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.901 -11.771 0.148 13.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.172 1.172 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.612 4.612 8 H 0.101 0.899 9 C 0.345 3.655 10 O -0.521 6.521 11 N -0.393 5.393 12 C 0.056 3.944 13 H 0.073 0.927 14 C -0.001 4.001 15 O -0.378 6.378 16 C -0.123 4.123 17 C -0.162 4.162 18 C -0.163 4.163 19 C -0.181 4.181 20 H 0.084 0.916 21 H 0.223 0.777 22 H 0.088 0.912 23 H 0.027 0.973 24 H 0.237 0.763 25 H 0.115 0.885 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.119 -11.556 0.730 12.660 hybrid contribution 0.024 0.848 -0.645 1.066 sum 5.143 -10.707 0.085 11.879 Atomic orbital electron populations 1.70195 1.09452 1.28773 1.36767 1.26958 0.95547 1.04885 0.91223 0.84983 0.79278 0.75475 0.78606 1.17213 1.19261 1.19193 1.21467 0.94588 0.90397 1.54762 0.89939 1.18550 0.86809 0.84369 0.75796 1.90532 1.16056 1.88003 1.57514 1.45732 1.08957 1.04341 1.80292 1.20778 0.95483 0.84489 0.93635 0.92720 1.22449 0.86523 0.97903 0.93255 1.86419 1.31292 1.91556 1.28566 1.22684 0.99710 0.94479 0.95404 1.22848 0.99686 0.95590 0.98106 1.22761 1.01726 0.94616 0.97169 1.22973 1.01468 0.97926 0.95725 0.91628 0.77665 0.91247 0.97309 0.76266 0.88518 0.89915 0.90532 0.90555 0.88699 0.92216 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.35 11.83 21.84 0.26 -51.09 16 2 C 0.03 1.64 5.50 85.30 0.47 2.11 16 3 Si 1.00 42.07 29.56 68.60 2.03 44.10 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.58 -33.82 9.54 24.83 0.24 -33.58 16 8 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 9 C 0.54 32.36 7.73 86.36 0.67 33.03 16 10 O -0.63 -43.17 14.66 -4.31 -0.06 -43.23 16 11 N -0.74 -35.13 5.01 -446.82 -2.24 -37.37 16 12 C 0.16 6.48 2.15 44.99 0.10 6.58 16 13 H 0.05 2.52 7.43 -2.38 -0.02 2.51 16 14 C 0.08 2.82 6.63 71.98 0.48 3.30 16 15 O -0.57 -17.96 12.96 -148.98 -1.93 -19.89 16 16 C -0.10 -3.14 2.88 -10.21 -0.03 -3.17 16 17 C -0.12 -2.94 6.97 31.12 0.22 -2.72 16 18 C -0.13 -2.68 8.08 31.12 0.25 -2.43 16 19 C -0.14 -4.12 7.65 31.18 0.24 -3.88 16 20 H 0.27 15.41 8.29 -92.71 -0.77 14.64 16 21 H 0.39 16.89 8.60 -92.71 -0.80 16.09 16 22 H 0.07 2.04 7.74 -2.39 -0.02 2.02 16 23 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.39 8.38 9.12 -74.06 -0.68 7.70 16 25 H 0.10 2.89 7.95 -2.39 -0.02 2.87 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 1.85 8.10 -2.39 -0.02 1.83 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.06 1.96 8.03 -2.38 -0.02 1.94 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -76.91 266.27 0.35 -76.56 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -0.33 Total: 31.69 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 2.62 Total: -0.77 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -1.98 Total: -88.46 kcal Atomic # 8 Polarization: -61.12 SS G_CDS: -1.99 Total: -63.12 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -76.91 0.35 -76.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597921589.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.359 kcal (2) G-P(sol) polarization free energy of solvation -76.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds