Wall clock time and date at job start Mon Mar 30 2020 03:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46923 * 2 1 4 4 O 1.42896 * 109.47237 * 240.00249 * 2 1 3 5 5 C 1.50692 * 109.47201 * 119.99759 * 2 1 3 6 6 O 1.21289 * 120.00083 * 117.42824 * 5 2 1 7 7 N 1.34780 * 120.00064 * 297.15872 * 5 2 1 8 8 C 1.47068 * 136.05828 * 355.14581 * 7 5 2 9 9 C 1.53750 * 87.88799 * 152.96571 * 8 7 5 10 10 C 1.50703 * 114.26314 * 139.79126 * 9 8 7 11 11 H 1.08003 * 120.00158 * 266.47109 * 10 9 8 12 12 C 1.37874 * 119.99877 * 86.47726 * 10 9 8 13 13 N 1.31512 * 120.00146 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99970 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47077 * 90.00188 * 14 12 10 16 16 H 1.48505 * 109.46983 * 209.99966 * 14 12 10 17 17 H 1.48506 * 109.47306 * 329.99893 * 14 12 10 18 18 C 1.47071 * 136.05558 * 175.52499 * 7 5 2 19 19 H 1.08997 * 109.47738 * 305.40827 * 1 2 3 20 20 H 1.09003 * 109.47150 * 65.40550 * 1 2 3 21 21 H 1.08998 * 109.47317 * 185.40409 * 1 2 3 22 22 H 1.09000 * 109.46865 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.47081 * 299.99913 * 3 2 1 24 24 H 1.08999 * 109.47227 * 59.99740 * 3 2 1 25 25 H 0.96699 * 114.00641 * 59.99750 * 4 2 1 26 26 H 1.09001 * 113.46741 * 267.69948 * 8 7 5 27 27 H 1.08998 * 113.46398 * 38.13685 * 8 7 5 28 28 H 1.09000 * 114.39735 * 272.67596 * 9 8 7 29 29 H 0.96997 * 120.00277 * 180.02562 * 13 12 10 30 30 H 1.08996 * 113.46732 * 321.85665 * 18 7 5 31 31 H 1.08997 * 113.46691 * 92.24087 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7103 1.2304 6 8 2.6906 -1.7230 1.1198 7 7 1.7546 -0.2174 2.4537 8 6 1.0965 0.9851 2.9865 9 6 0.7375 0.1654 4.2367 10 6 0.8756 0.9210 5.5334 11 1 1.7952 0.8630 6.0969 12 6 -0.1720 1.6861 6.0003 13 7 -1.2919 1.7561 5.3145 14 14 -0.0011 2.6221 7.6078 15 1 0.5418 3.9773 7.3362 16 1 -1.3326 2.7427 8.2543 17 1 0.9232 1.8903 8.5109 18 6 1.9824 -0.6420 3.8432 19 1 -0.3634 0.5954 0.8375 20 1 -0.3633 0.4277 -0.9344 21 1 -0.3634 -1.0231 0.0968 22 1 3.1299 1.4425 0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.7210 -0.2701 -1.9980 26 1 1.7867 1.8044 3.1881 27 1 0.2282 1.2977 2.4065 28 1 -0.1978 -0.3888 4.1585 29 1 -2.0288 2.2947 5.6427 30 1 1.8686 -1.7156 3.9932 31 1 2.9065 -0.2525 4.2702 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598023325.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:53 Heat of formation + Delta-G solvation = -76.319391 kcal Electronic energy + Delta-G solvation = -14665.010140 eV Core-core repulsion = 12139.836001 eV Total energy + Delta-G solvation = -2525.174139 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.48995 -39.28793 -37.83039 -34.69593 -33.42903 -30.59575 -28.40145 -27.19056 -26.69130 -24.36709 -21.87430 -19.84329 -18.69524 -17.89876 -17.54655 -17.00599 -16.60447 -16.25133 -15.58127 -14.76039 -14.48848 -14.33495 -14.14164 -13.46129 -13.35169 -13.14736 -13.07231 -12.82292 -12.72492 -12.63598 -12.37562 -12.13516 -11.33051 -11.19079 -11.03070 -10.64742 -10.46904 -9.60784 -8.15752 -6.26426 1.48460 1.51002 1.52120 1.60067 1.79174 2.47131 3.13944 3.25290 3.48051 3.73686 3.91836 4.20506 4.36626 4.46512 4.58254 4.59196 4.67960 4.71607 4.78833 4.83041 4.89563 5.03939 5.15865 5.22150 5.60371 5.82209 6.23703 6.78211 6.81720 6.85711 7.11250 7.43422 8.94049 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053113 B = 0.007738 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.055639 B = 3617.814035 C = 3840.413603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.124 3.876 3 C -0.172 4.172 4 O -0.560 6.560 5 C 0.532 3.468 6 O -0.594 6.594 7 N -0.639 5.639 8 C 0.113 3.887 9 C 0.025 3.975 10 C -0.530 4.530 11 H 0.065 0.935 12 C 0.025 3.975 13 N -0.915 5.915 14 Si 0.956 3.044 15 H -0.272 1.272 16 H -0.287 1.287 17 H -0.269 1.269 18 C 0.102 3.898 19 H 0.072 0.928 20 H 0.107 0.893 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.106 0.894 24 H 0.073 0.927 25 H 0.402 0.598 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.265 0.735 30 H 0.054 0.946 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.472 3.587 -8.700 9.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.080 3.920 3 C -0.229 4.229 4 O -0.369 6.369 5 C 0.322 3.678 6 O -0.475 6.475 7 N -0.373 5.373 8 C -0.009 4.009 9 C 0.006 3.994 10 C -0.568 4.568 11 H 0.083 0.917 12 C -0.176 4.176 13 N -0.553 5.553 14 Si 0.782 3.218 15 H -0.198 1.198 16 H -0.213 1.213 17 H -0.194 1.194 18 C -0.020 4.020 19 H 0.090 0.910 20 H 0.126 0.874 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.125 0.875 24 H 0.092 0.908 25 H 0.253 0.747 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.951 2.672 -8.543 9.161 hybrid contribution -0.266 0.562 0.514 0.807 sum 1.686 3.234 -8.028 8.818 Atomic orbital electron populations 1.22465 0.92116 1.02883 1.05310 1.20880 0.94895 0.92137 0.84084 1.22499 1.01949 0.93056 1.05400 1.86589 1.77202 1.57325 1.15772 1.20529 0.78887 0.84492 0.83869 1.90612 1.41925 1.28251 1.86706 1.49897 1.57464 1.25757 1.04231 1.23542 0.95216 0.88222 0.93925 1.20270 0.92381 0.93365 0.93392 1.21191 1.00545 1.28654 1.06386 0.91667 1.25703 0.94643 0.97194 1.00045 1.70035 1.04668 1.40435 1.40146 0.85578 0.77295 0.79097 0.79816 1.19784 1.21276 1.19392 1.23302 1.00788 0.99482 0.78432 0.90955 0.87403 0.93196 0.92410 0.87498 0.90808 0.74712 0.89823 0.90981 0.93989 0.92581 0.92793 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.45 8.68 71.98 0.62 -3.83 16 2 C 0.12 3.77 1.18 -11.54 -0.01 3.75 16 3 C -0.17 -4.14 8.66 71.98 0.62 -3.52 16 4 O -0.56 -16.47 12.51 -129.96 -1.63 -18.10 16 5 C 0.53 22.10 6.81 87.65 0.60 22.69 16 6 O -0.59 -29.76 17.28 15.97 0.28 -29.48 16 7 N -0.64 -26.07 3.59 -857.72 -3.08 -29.15 16 8 C 0.11 4.48 5.76 83.27 0.48 4.96 16 9 C 0.03 1.16 3.79 -11.12 -0.04 1.12 16 10 C -0.53 -26.27 8.83 25.60 0.23 -26.05 16 11 H 0.07 3.15 7.81 -2.91 -0.02 3.13 16 12 C 0.02 1.25 5.46 84.65 0.46 1.71 16 13 N -0.91 -48.33 13.26 21.45 0.28 -48.04 16 14 Si 0.96 39.82 29.54 68.60 2.03 41.85 16 15 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 16 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 18 C 0.10 4.32 8.18 83.19 0.68 5.00 16 19 H 0.07 2.04 5.83 -2.39 -0.01 2.03 16 20 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 21 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.07 1.89 5.86 -2.39 -0.01 1.87 16 25 H 0.40 6.58 9.05 -74.06 -0.67 5.91 16 26 H 0.08 3.20 8.10 -2.39 -0.02 3.18 16 27 H 0.07 2.74 5.91 -2.39 -0.01 2.72 16 28 H 0.04 2.16 8.11 -2.39 -0.02 2.14 16 29 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.08 3.36 8.10 -2.39 -0.02 3.34 16 Total: -1.00 -65.23 262.64 1.98 -63.25 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.46 Total: 13.84 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 3.64 Total: 5.84 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -2.80 Total: -77.20 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -1.35 Total: -47.58 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -65.23 1.98 -63.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598023325.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.069 kcal (2) G-P(sol) polarization free energy of solvation -65.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds