Wall clock time and date at job start Mon Mar 30 2020 02:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48492 * 109.47586 * 269.99647 * 3 2 1 5 5 H 1.48505 * 109.47293 * 30.00591 * 3 2 1 6 6 H 1.48505 * 109.46772 * 149.99896 * 3 2 1 7 7 C 1.38801 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00093 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.53866 * 113.59704 * 274.19047 * 11 10 9 13 13 C 1.53501 * 86.87354 * 220.37778 * 12 11 10 14 14 C 1.52591 * 120.61730 * 149.62281 * 13 12 11 15 15 S 1.81503 * 89.77108 * 93.86150 * 14 13 12 16 16 C 1.52597 * 120.49565 * 260.60669 * 13 12 11 17 17 C 1.53327 * 87.59749 * 25.09144 * 13 12 11 18 18 H 0.97010 * 119.99864 * 0.02562 * 1 2 3 19 19 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 20 20 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 21 21 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 22 22 H 1.09003 * 112.83885 * 45.33148 * 11 10 9 23 23 H 1.08999 * 113.63890 * 334.86191 * 12 11 10 24 24 H 1.09007 * 113.64115 * 105.84158 * 12 11 10 25 25 H 1.08991 * 113.16963 * 209.08999 * 14 13 12 26 26 H 1.09002 * 113.16046 * 338.64109 * 14 13 12 27 27 H 1.08994 * 113.16894 * 21.26986 * 16 13 12 28 28 H 1.09003 * 113.16089 * 150.76374 * 16 13 12 29 29 H 1.09007 * 113.63575 * 220.40103 * 17 13 12 30 30 H 1.08991 * 113.72183 * 89.43583 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0009 12 6 6.2031 -1.9761 -1.4069 13 6 7.4103 -2.7999 -0.9376 14 6 8.2051 -3.6470 -1.9270 15 16 9.3648 -2.2708 -2.1626 16 6 8.6921 -2.1065 -0.4849 17 6 6.4791 -3.4624 0.0846 18 1 -0.4850 0.8401 -0.0004 19 1 3.8646 -0.3620 0.0004 20 1 3.8485 -3.0433 0.8881 21 1 3.8492 -3.0414 -0.8919 22 1 5.9033 -1.4202 0.7142 23 1 5.6278 -2.4560 -2.1987 24 1 6.4418 -0.9354 -1.6265 25 1 8.6657 -4.5222 -1.4690 26 1 7.6436 -3.8935 -2.8282 27 1 8.5362 -1.0703 -0.1850 28 1 9.2484 -2.6770 0.2589 29 1 6.9391 -3.6135 1.0613 30 1 5.9800 -4.3554 -0.2912 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642870224.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:35 Heat of formation + Delta-G solvation = 51.899391 kcal Electronic energy + Delta-G solvation = -12160.833525 eV Core-core repulsion = 10083.972240 eV Total energy + Delta-G solvation = -2076.861285 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.87140 -34.98882 -32.68663 -30.82850 -26.54617 -26.34524 -25.73612 -22.29314 -20.51743 -18.41288 -17.49533 -16.57402 -15.39629 -15.21988 -14.53328 -14.43940 -13.48301 -13.23932 -13.13507 -12.65179 -12.36030 -12.17009 -11.79114 -11.23476 -11.09660 -10.88841 -10.58241 -10.41383 -10.13158 -10.11634 -9.69407 -9.55106 -8.86820 -7.89444 -7.20004 -5.75168 -3.10109 1.69023 1.81881 3.38803 3.41878 3.46656 4.07429 4.27018 4.60924 4.71575 4.80778 4.87183 5.11932 5.28166 5.29514 5.46313 5.51814 5.58126 5.74097 5.84763 5.86210 5.96184 6.11113 6.27903 6.40427 6.69906 6.83113 8.01762 8.44295 9.24003 9.96555 10.16760 11.43429 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.053726 B = 0.006681 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.041152 B = 4189.834834 C = 4479.715954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.756 5.756 10 C 0.167 3.833 11 C -0.117 4.117 12 C -0.097 4.097 13 C -0.096 4.096 14 C -0.065 4.065 15 S -0.306 6.306 16 C -0.055 4.055 17 C -0.108 4.108 18 H 0.259 0.741 19 H 0.361 0.639 20 H 0.027 0.973 21 H 0.028 0.972 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.611 -6.757 -0.996 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.040 3.960 11 C -0.136 4.136 12 C -0.135 4.135 13 C -0.097 4.097 14 C -0.213 4.213 15 S -0.080 6.080 16 C -0.204 4.204 17 C -0.148 4.148 18 H 0.069 0.931 19 H 0.193 0.807 20 H 0.045 0.955 21 H 0.046 0.954 22 H 0.107 0.893 23 H 0.111 0.889 24 H 0.090 0.910 25 H 0.121 0.879 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.089 0.911 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 18.324 -6.226 -1.975 19.453 hybrid contribution -0.037 0.781 0.706 1.053 sum 18.287 -5.445 -1.269 19.123 Atomic orbital electron populations 1.69709 1.05115 1.25784 1.57771 1.24671 0.95234 0.97207 1.02129 0.86539 0.79181 0.84972 0.77797 1.21065 1.21766 1.20363 1.19078 0.80757 0.94711 1.42787 0.89270 1.42704 1.03972 1.02332 1.91116 1.20610 0.87622 0.89222 0.98505 1.22716 0.96209 0.97560 0.97109 1.22848 0.93030 0.99812 0.97779 1.22645 0.93600 0.96860 0.96644 1.24270 0.96455 0.98208 1.02409 1.88927 1.62238 1.36811 1.19977 1.24079 0.95990 1.05162 0.95143 1.22848 0.96039 0.98020 0.97941 0.93097 0.80682 0.95523 0.95410 0.89283 0.88901 0.90958 0.87921 0.88571 0.88540 0.87738 0.91051 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.62 13.97 55.49 0.78 -28.84 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 22.28 27.74 -169.99 -4.71 17.57 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 7 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 N -0.76 -17.92 5.41 -59.91 -0.32 -18.24 16 10 C 0.17 3.12 6.08 -4.04 -0.02 3.10 16 11 C -0.12 -1.66 3.75 -89.72 -0.34 -1.99 16 12 C -0.10 -1.28 7.35 -26.02 -0.19 -1.47 16 13 C -0.10 -1.02 0.93 -154.50 -0.14 -1.17 16 14 C -0.07 -0.65 7.69 36.95 0.28 -0.36 16 15 S -0.31 -3.71 24.79 -107.50 -2.66 -6.37 16 16 C -0.06 -0.57 7.69 36.95 0.28 -0.28 16 17 C -0.11 -1.16 7.35 -26.11 -0.19 -1.35 16 18 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 19 H 0.36 8.35 5.53 -40.82 -0.23 8.13 16 20 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.03 0.52 7.87 -51.93 -0.41 0.12 16 22 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.09 1.25 7.92 -51.93 -0.41 0.84 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 260.38 15.07 3.92 3.92 Total: -1.00 -31.39 260.38 -8.02 -39.41 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.44 Total: 3.19 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.57 Total: -10.63 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.45 Total: -47.08 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.66 Total: -6.37 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.39 -8.02 -39.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642870224.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.310 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds