Wall clock time and date at job start Mon Mar 30 2020 02:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48492 * 109.47586 * 269.99647 * 3 2 1 5 5 H 1.48505 * 109.47293 * 30.00591 * 3 2 1 6 6 H 1.48505 * 109.46772 * 149.99896 * 3 2 1 7 7 C 1.38801 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00093 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.53866 * 113.59704 * 274.19047 * 11 10 9 13 13 C 1.53501 * 86.87354 * 220.37778 * 12 11 10 14 14 C 1.52591 * 120.61730 * 149.62281 * 13 12 11 15 15 S 1.81503 * 89.77108 * 93.86150 * 14 13 12 16 16 C 1.52597 * 120.49565 * 260.60669 * 13 12 11 17 17 C 1.53327 * 87.59749 * 25.09144 * 13 12 11 18 18 H 0.97010 * 119.99864 * 0.02562 * 1 2 3 19 19 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 20 20 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 21 21 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 22 22 H 1.09003 * 112.83885 * 45.33148 * 11 10 9 23 23 H 1.08999 * 113.63890 * 334.86191 * 12 11 10 24 24 H 1.09007 * 113.64115 * 105.84158 * 12 11 10 25 25 H 1.08991 * 113.16963 * 209.08999 * 14 13 12 26 26 H 1.09002 * 113.16046 * 338.64109 * 14 13 12 27 27 H 1.08994 * 113.16894 * 21.26986 * 16 13 12 28 28 H 1.09003 * 113.16089 * 150.76374 * 16 13 12 29 29 H 1.09007 * 113.63575 * 220.40103 * 17 13 12 30 30 H 1.08991 * 113.72183 * 89.43583 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0009 12 6 6.2031 -1.9761 -1.4069 13 6 7.4103 -2.7999 -0.9376 14 6 8.2051 -3.6470 -1.9270 15 16 9.3648 -2.2708 -2.1626 16 6 8.6921 -2.1065 -0.4849 17 6 6.4791 -3.4624 0.0846 18 1 -0.4850 0.8401 -0.0004 19 1 3.8646 -0.3620 0.0004 20 1 3.8485 -3.0433 0.8881 21 1 3.8492 -3.0414 -0.8919 22 1 5.9033 -1.4202 0.7142 23 1 5.6278 -2.4560 -2.1987 24 1 6.4418 -0.9354 -1.6265 25 1 8.6657 -4.5222 -1.4690 26 1 7.6436 -3.8935 -2.8282 27 1 8.5362 -1.0703 -0.1850 28 1 9.2484 -2.6770 0.2589 29 1 6.9391 -3.6135 1.0613 30 1 5.9800 -4.3554 -0.2912 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642870224.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:35 Heat of formation + Delta-G solvation = 32.169738 kcal Electronic energy + Delta-G solvation = -12161.689067 eV Core-core repulsion = 10083.972240 eV Total energy + Delta-G solvation = -2077.716827 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.85190 -36.71258 -34.20548 -32.65467 -28.01125 -27.32251 -26.69005 -24.20904 -21.86904 -19.63989 -19.23033 -17.44944 -16.72671 -16.33740 -16.00045 -15.88362 -15.01255 -14.58652 -14.45765 -13.97153 -13.81605 -13.20787 -13.06804 -12.87736 -12.57956 -12.19183 -12.03818 -11.83865 -11.62014 -11.34568 -11.17291 -10.95551 -10.63781 -9.26201 -8.81131 -8.02279 -5.34785 0.90477 0.98245 1.37796 1.41407 1.48636 2.48948 3.20799 3.29301 3.38436 3.64201 3.75670 3.95538 4.11994 4.33213 4.43416 4.51276 4.64331 4.70132 4.72818 4.92318 4.96916 5.04138 5.07460 5.21554 5.37845 5.59159 5.77672 6.22575 7.09897 7.87765 8.06113 9.19537 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.053726 B = 0.006681 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.041152 B = 4189.834834 C = 4479.715954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.066 4.066 3 Si 0.955 3.045 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.250 1.250 7 C -0.235 4.235 8 H 0.056 0.944 9 N -0.759 5.759 10 C 0.163 3.837 11 C -0.118 4.118 12 C -0.104 4.104 13 C -0.086 4.086 14 C -0.048 4.048 15 S -0.370 6.370 16 C -0.041 4.041 17 C -0.090 4.090 18 H 0.258 0.742 19 H 0.365 0.635 20 H 0.024 0.976 21 H 0.025 0.975 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.128 0.872 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.130 0.870 29 H 0.093 0.907 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.983 -7.089 -0.380 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.782 3.218 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.175 1.175 7 C -0.366 4.366 8 H 0.074 0.926 9 N -0.405 5.405 10 C 0.037 3.963 11 C -0.136 4.136 12 C -0.141 4.141 13 C -0.087 4.087 14 C -0.196 4.196 15 S -0.144 6.144 16 C -0.188 4.188 17 C -0.131 4.131 18 H 0.066 0.934 19 H 0.198 0.802 20 H 0.042 0.958 21 H 0.043 0.957 22 H 0.108 0.892 23 H 0.104 0.896 24 H 0.080 0.920 25 H 0.146 0.854 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.148 0.852 29 H 0.112 0.888 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 20.751 -6.591 -1.358 21.815 hybrid contribution -0.822 0.772 0.502 1.234 sum 19.929 -5.819 -0.856 20.779 Atomic orbital electron populations 1.69893 1.07173 1.26662 1.59921 1.25518 0.96122 1.01301 1.02754 0.85401 0.78712 0.79573 0.78068 1.20580 1.22229 1.17480 1.19087 0.82987 0.93447 1.41053 0.92602 1.42754 1.02355 1.04480 1.90873 1.20819 0.90367 0.87063 0.98031 1.22661 0.93109 0.99957 0.97921 1.22840 0.94466 0.99780 0.97042 1.22444 0.93109 0.96512 0.96669 1.24322 0.95091 0.97820 1.02318 1.89253 1.63410 1.39108 1.22633 1.24158 0.95208 1.05545 0.93928 1.22795 0.94675 0.96492 0.99121 0.93370 0.80168 0.95753 0.95676 0.89177 0.89569 0.91975 0.85385 0.88432 0.88709 0.85178 0.88802 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.85 13.97 21.65 0.30 -63.55 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 3 Si 0.96 45.84 27.74 68.60 1.90 47.74 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.25 -10.76 6.52 99.48 0.65 -10.11 16 7 C -0.23 -13.53 10.47 84.03 0.88 -12.65 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 9 N -0.76 -35.29 5.41 -343.45 -1.86 -37.15 16 10 C 0.16 5.87 6.08 86.38 0.53 6.39 16 11 C -0.12 -3.03 3.75 -10.21 -0.04 -3.06 16 12 C -0.10 -2.52 7.35 31.05 0.23 -2.29 16 13 C -0.09 -1.55 0.93 -52.17 -0.05 -1.59 16 14 C -0.05 -0.79 7.69 71.85 0.55 -0.24 16 15 S -0.37 -8.28 24.79 -56.49 -1.40 -9.68 16 16 C -0.04 -0.69 7.69 71.85 0.55 -0.14 16 17 C -0.09 -1.58 7.35 31.00 0.23 -1.35 16 18 H 0.26 15.87 8.31 -92.70 -0.77 15.09 16 19 H 0.37 16.21 5.53 -92.71 -0.51 15.69 16 20 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 21 H 0.03 0.93 7.87 -2.39 -0.02 0.91 16 22 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.09 2.20 7.92 -2.39 -0.02 2.18 16 24 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.10 1.64 8.10 -2.39 -0.02 1.62 16 Total: -1.00 -68.57 260.38 2.84 -65.73 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.54 Total: 15.29 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 3.35 Total: -18.39 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -1.55 Total: -100.70 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.74 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.40 Total: -9.68 kcal Total: -68.57 2.84 -65.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642870224.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.902 kcal (2) G-P(sol) polarization free energy of solvation -68.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds