Wall clock time and date at job start Mon Mar 30 2020 02:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48494 * 109.47196 * 239.99790 * 3 2 1 5 5 H 1.48494 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 120.00287 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.47155 * 120.19748 * 269.72684 * 11 10 9 13 13 C 1.53712 * 108.09596 * 110.88961 * 12 11 10 14 14 C 1.51789 * 110.48775 * 85.79584 * 13 12 11 15 15 O 1.41975 * 113.47314 * 294.31966 * 14 13 12 16 16 C 1.42858 * 115.33701 * 67.29888 * 15 14 13 17 17 C 1.33910 * 120.19646 * 90.00210 * 11 10 9 18 18 O 1.21280 * 120.00195 * 358.65573 * 17 11 10 19 19 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 21 21 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 22 22 H 1.09004 * 109.46930 * 60.00105 * 10 9 7 23 23 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 24 24 H 1.09007 * 109.67947 * 230.58530 * 12 11 10 25 25 H 1.08998 * 109.68614 * 351.13470 * 12 11 10 26 26 H 1.09003 * 109.35643 * 325.49560 * 13 12 11 27 27 H 1.08999 * 109.20034 * 205.99189 * 13 12 11 28 28 H 1.08998 * 108.68152 * 173.29299 * 14 13 12 29 29 H 1.09000 * 108.58164 * 55.28284 * 14 13 12 30 30 H 1.09009 * 109.57297 * 154.54385 * 16 15 14 31 31 H 1.08997 * 109.69017 * 34.21554 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 7 1.5127 -4.9309 -0.0033 12 6 1.1483 -5.5756 1.2683 13 6 -0.3784 -5.4915 1.4260 14 6 -1.0504 -6.6549 0.7198 15 8 -0.8882 -6.6304 -0.6905 16 6 0.4460 -6.8398 -1.1561 17 6 1.1756 -5.5135 -1.1609 18 8 1.4552 -4.9787 -2.2129 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5563 -0.8920 21 1 0.6240 -2.5576 0.8880 22 1 2.8719 -3.6051 0.8873 23 1 2.8719 -3.6036 -0.8927 24 1 1.4610 -6.6198 1.2533 25 1 1.6348 -5.0582 2.0951 26 1 -0.7350 -4.5554 0.9961 27 1 -0.6314 -5.5196 2.4859 28 1 -2.1158 -6.6342 0.9490 29 1 -0.6294 -7.5842 1.1036 30 1 0.4204 -7.2461 -2.1673 31 1 0.9605 -7.5373 -0.4951 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685969665.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:57 Heat of formation + Delta-G solvation = -84.844650 kcal Electronic energy + Delta-G solvation = -14690.978517 eV Core-core repulsion = 12165.434694 eV Total energy + Delta-G solvation = -2525.543822 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.10578 -37.51337 -35.66793 -33.21627 -31.79239 -30.17896 -27.61206 -25.73092 -24.50487 -21.72025 -21.17677 -18.75438 -17.41047 -16.60491 -16.21762 -16.01341 -15.08215 -14.57725 -14.00913 -13.84202 -13.55971 -13.17622 -12.57745 -12.30590 -12.23998 -11.59555 -11.53162 -11.16821 -10.88981 -10.69147 -10.66587 -10.27295 -9.86923 -9.81076 -9.26040 -8.95113 -8.33449 -8.04375 -5.98670 -4.02043 2.86311 3.34550 3.38703 3.40525 3.49282 4.01878 4.47649 4.64324 4.82889 4.92367 5.02416 5.27185 5.35651 5.37148 5.50081 5.60148 5.80971 5.82918 6.11816 6.35429 6.53763 6.86660 6.92494 7.14224 7.62152 7.74444 7.96944 8.02078 8.38075 8.63715 9.04525 9.61525 11.12682 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045957 B = 0.007766 C = 0.007420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.114967 B = 3604.700532 C = 3772.598390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.015 3.985 10 C 0.116 3.884 11 N -0.603 5.603 12 C 0.108 3.892 13 C -0.183 4.183 14 C 0.060 3.940 15 O -0.364 6.364 16 C 0.050 3.950 17 C 0.483 3.517 18 O -0.535 6.535 19 H 0.261 0.739 20 H 0.021 0.979 21 H 0.016 0.984 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.118 0.882 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.180 -14.561 4.911 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.023 4.023 10 C -0.005 4.005 11 N -0.337 5.337 12 C -0.015 4.015 13 C -0.222 4.222 14 C -0.017 4.017 15 O -0.282 6.282 16 C -0.030 4.030 17 C 0.269 3.731 18 O -0.412 6.412 19 H 0.071 0.929 20 H 0.040 0.960 21 H 0.034 0.966 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.065 0.935 30 H 0.136 0.864 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.025 -14.121 4.237 14.743 hybrid contribution 0.583 0.985 0.382 1.207 sum 0.608 -13.136 4.618 13.938 Atomic orbital electron populations 1.69965 1.06082 1.26738 1.50375 1.25000 0.94849 0.99254 0.95174 0.86620 0.79547 0.82988 0.78615 1.20158 1.21262 1.20251 1.21068 0.92965 0.90809 1.51267 0.92625 1.19365 0.94352 0.90948 0.97627 1.21925 0.95377 0.81872 1.01309 1.48284 1.56176 1.23909 1.05294 1.21899 0.94910 0.97527 0.87164 1.22637 0.96036 1.01599 1.01881 1.22302 1.01684 0.96834 0.80898 1.87807 1.25565 1.92910 1.21896 1.23020 0.83722 0.94033 1.02261 1.21243 0.80005 0.87812 0.84023 1.90714 1.54461 1.65026 1.30964 0.92918 0.96026 0.96616 0.91870 0.90984 0.91537 0.89083 0.89045 0.89583 0.88675 0.93477 0.86374 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.01 0.40 5.30 -27.88 -0.15 0.25 16 10 C 0.12 2.51 5.35 -4.04 -0.02 2.49 16 11 N -0.60 -11.04 2.48 -172.68 -0.43 -11.47 16 12 C 0.11 1.43 6.00 -3.31 -0.02 1.41 16 13 C -0.18 -2.36 5.90 -26.98 -0.16 -2.52 16 14 C 0.06 0.68 6.23 36.54 0.23 0.91 16 15 O -0.36 -5.46 10.47 -35.23 -0.37 -5.82 16 16 C 0.05 0.69 6.35 36.33 0.23 0.92 16 17 C 0.48 9.28 7.24 -11.04 -0.08 9.20 16 18 O -0.53 -12.79 16.68 5.56 0.09 -12.70 16 19 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 20 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.06 1.23 7.88 -51.93 -0.41 0.82 16 23 H 0.07 1.68 7.44 -51.93 -0.39 1.29 16 24 H 0.07 0.67 6.78 -51.93 -0.35 0.32 16 25 H 0.09 1.13 7.80 -51.93 -0.40 0.72 16 26 H 0.09 1.58 8.05 -51.93 -0.42 1.17 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.41 7.85 -51.93 -0.41 0.00 16 30 H 0.12 1.51 8.13 -51.92 -0.42 1.09 16 31 H 0.07 0.75 6.76 -51.93 -0.35 0.40 16 LS Contribution 260.02 15.07 3.92 3.92 Total: -1.00 -34.81 260.02 -5.84 -40.65 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -4.38 Total: -3.71 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -0.38 Total: -1.14 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.31 Total: -38.24 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.28 Total: -18.52 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -34.81 -5.84 -40.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969665.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.195 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds