Wall clock time and date at job start Mon Mar 30 2020 02:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48494 * 109.47196 * 239.99790 * 3 2 1 5 5 H 1.48494 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 120.00287 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.47155 * 120.19748 * 269.72684 * 11 10 9 13 13 C 1.53712 * 108.09596 * 110.88961 * 12 11 10 14 14 C 1.51789 * 110.48775 * 85.79584 * 13 12 11 15 15 O 1.41975 * 113.47314 * 294.31966 * 14 13 12 16 16 C 1.42858 * 115.33701 * 67.29888 * 15 14 13 17 17 C 1.33910 * 120.19646 * 90.00210 * 11 10 9 18 18 O 1.21280 * 120.00195 * 358.65573 * 17 11 10 19 19 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 21 21 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 22 22 H 1.09004 * 109.46930 * 60.00105 * 10 9 7 23 23 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 24 24 H 1.09007 * 109.67947 * 230.58530 * 12 11 10 25 25 H 1.08998 * 109.68614 * 351.13470 * 12 11 10 26 26 H 1.09003 * 109.35643 * 325.49560 * 13 12 11 27 27 H 1.08999 * 109.20034 * 205.99189 * 13 12 11 28 28 H 1.08998 * 108.68152 * 173.29299 * 14 13 12 29 29 H 1.09000 * 108.58164 * 55.28284 * 14 13 12 30 30 H 1.09009 * 109.57297 * 154.54385 * 16 15 14 31 31 H 1.08997 * 109.69017 * 34.21554 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 7 1.5127 -4.9309 -0.0033 12 6 1.1483 -5.5756 1.2683 13 6 -0.3784 -5.4915 1.4260 14 6 -1.0504 -6.6549 0.7198 15 8 -0.8882 -6.6304 -0.6905 16 6 0.4460 -6.8398 -1.1561 17 6 1.1756 -5.5135 -1.1609 18 8 1.4552 -4.9787 -2.2129 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5563 -0.8920 21 1 0.6240 -2.5576 0.8880 22 1 2.8719 -3.6051 0.8873 23 1 2.8719 -3.6036 -0.8927 24 1 1.4610 -6.6198 1.2533 25 1 1.6348 -5.0582 2.0951 26 1 -0.7350 -4.5554 0.9961 27 1 -0.6314 -5.5196 2.4859 28 1 -2.1158 -6.6342 0.9490 29 1 -0.6294 -7.5842 1.1036 30 1 0.4204 -7.2461 -2.1673 31 1 0.9605 -7.5373 -0.4951 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685969665.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:57 Heat of formation + Delta-G solvation = -110.734784 kcal Electronic energy + Delta-G solvation = -14692.101197 eV Core-core repulsion = 12165.434694 eV Total energy + Delta-G solvation = -2526.666503 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.44654 -38.79503 -37.19124 -35.28009 -33.16875 -31.92852 -29.10352 -26.84307 -26.44678 -23.25486 -22.65854 -20.21773 -18.77686 -18.50842 -17.64852 -17.16112 -16.63503 -16.40199 -15.49237 -15.27208 -14.80963 -14.45617 -14.40317 -14.13509 -13.49673 -13.45205 -12.86029 -12.84963 -12.55429 -12.42672 -11.89502 -11.82998 -11.62189 -11.49442 -11.26288 -10.61460 -10.40875 -9.62736 -8.24820 -6.38412 1.36667 1.41712 1.45398 1.49707 2.09379 2.39525 2.97853 3.08071 3.46645 3.85810 3.91256 4.05382 4.27663 4.36670 4.44481 4.54976 4.58701 4.70302 4.79621 4.90621 4.96396 5.27143 5.28379 5.45647 5.57137 5.79820 6.13533 6.16461 6.47564 6.77347 7.16580 7.31428 8.87187 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045957 B = 0.007766 C = 0.007420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.114967 B = 3604.700532 C = 3772.598390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.029 3.971 10 C 0.129 3.871 11 N -0.605 5.605 12 C 0.100 3.900 13 C -0.180 4.180 14 C 0.052 3.948 15 O -0.390 6.390 16 C 0.062 3.938 17 C 0.467 3.533 18 O -0.599 6.599 19 H 0.264 0.736 20 H -0.035 1.035 21 H 0.000 1.000 22 H 0.093 0.907 23 H 0.050 0.950 24 H 0.115 0.885 25 H 0.101 0.899 26 H 0.033 0.967 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 -16.017 6.707 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.586 4.586 8 H 0.084 0.916 9 C -0.009 4.009 10 C 0.007 3.993 11 N -0.337 5.337 12 C -0.021 4.021 13 C -0.218 4.218 14 C -0.024 4.024 15 O -0.308 6.308 16 C -0.017 4.017 17 C 0.256 3.744 18 O -0.480 6.480 19 H 0.073 0.927 20 H -0.016 1.016 21 H 0.018 0.982 22 H 0.111 0.889 23 H 0.068 0.932 24 H 0.133 0.867 25 H 0.119 0.881 26 H 0.052 0.948 27 H 0.137 0.863 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.145 0.855 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.999 -15.619 6.084 16.792 hybrid contribution 0.209 1.421 -0.134 1.443 sum 1.208 -14.197 5.950 15.441 Atomic orbital electron populations 1.70123 1.08067 1.27976 1.51162 1.26064 0.95803 1.03719 0.94340 0.85401 0.78198 0.77466 0.79380 1.19577 1.20728 1.18189 1.21553 0.93736 0.91937 1.51350 0.91555 1.19143 0.94430 0.93262 0.94030 1.21493 0.94169 0.82107 1.01580 1.48413 1.55302 1.22565 1.07423 1.22357 0.95120 0.99859 0.84789 1.22617 0.95954 0.99571 1.03690 1.22584 1.02760 0.97908 0.79170 1.87801 1.25845 1.92918 1.24207 1.23029 0.83226 0.91154 1.04336 1.22488 0.79278 0.89502 0.83160 1.90671 1.56962 1.67147 1.33234 0.92709 1.01645 0.98214 0.88912 0.93162 0.86699 0.88095 0.94805 0.86336 0.87591 0.88828 0.85542 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.38 13.29 21.45 0.28 -59.10 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 3 Si 0.97 45.56 29.54 68.60 2.03 47.58 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.55 -32.54 9.11 25.60 0.23 -32.31 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.03 1.66 5.30 29.85 0.16 1.82 16 10 C 0.13 5.72 5.35 86.38 0.46 6.19 16 11 N -0.61 -21.98 2.48 -819.10 -2.03 -24.01 16 12 C 0.10 2.35 6.00 86.49 0.52 2.87 16 13 C -0.18 -4.31 5.90 30.44 0.18 -4.13 16 14 C 0.05 1.02 6.23 71.58 0.45 1.46 16 15 O -0.39 -10.93 10.47 -148.97 -1.56 -12.49 16 16 C 0.06 1.59 6.35 71.45 0.45 2.04 16 17 C 0.47 18.08 7.24 88.01 0.64 18.72 16 18 O -0.60 -30.09 16.68 -3.03 -0.05 -30.14 16 19 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 20 H -0.03 -2.34 8.14 -2.38 -0.02 -2.36 16 21 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 22 H 0.09 3.53 7.88 -2.38 -0.02 3.51 16 23 H 0.05 2.43 7.44 -2.39 -0.02 2.42 16 24 H 0.12 1.66 6.78 -2.38 -0.02 1.64 16 25 H 0.10 2.18 7.80 -2.39 -0.02 2.16 16 26 H 0.03 1.20 8.05 -2.39 -0.02 1.18 16 27 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.09 1.05 7.85 -2.39 -0.02 1.03 16 30 H 0.13 3.01 8.13 -2.38 -0.02 2.99 16 31 H 0.12 1.89 6.76 -2.39 -0.02 1.87 16 Total: -1.00 -81.90 260.02 3.32 -78.58 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.11 Total: 2.54 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 3.55 Total: -2.96 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -1.75 Total: -83.11 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -1.61 Total: -42.63 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -81.90 3.32 -78.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969665.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.157 kcal (2) G-P(sol) polarization free energy of solvation -81.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds