Wall clock time and date at job start Mon Mar 30 2020 02:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00212 * 2 1 4 4 H 1.48501 * 109.46874 * 239.99755 * 3 2 1 5 5 H 1.48498 * 109.47260 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46882 * 119.99907 * 3 2 1 7 7 C 1.38813 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99926 * 165.79534 * 7 2 1 9 9 N 1.36931 * 120.00382 * 345.79357 * 7 2 1 10 10 C 1.46507 * 120.00042 * 307.79491 * 9 7 2 11 11 C 1.52992 * 117.49395 * 1.99806 * 10 9 7 12 12 C 1.52996 * 60.00187 * 252.51557 * 11 10 9 13 13 C 1.46497 * 120.00311 * 127.78726 * 9 7 2 14 14 H 1.08995 * 111.02510 * 175.77913 * 13 9 7 15 15 C 1.54956 * 111.12358 * 51.55856 * 13 9 7 16 16 O 1.43643 * 105.13767 * 205.63660 * 15 13 9 17 17 C 1.43239 * 109.96966 * 24.42935 * 16 15 13 18 18 C 1.54380 * 107.59296 * 358.28889 * 17 16 15 19 19 H 1.09000 * 110.84958 * 97.03018 * 18 17 16 20 20 O 1.42898 * 110.84809 * 220.45371 * 18 17 16 21 21 H 0.97011 * 120.00079 * 356.47389 * 1 2 3 22 22 H 1.08992 * 115.54867 * 147.71300 * 10 9 7 23 23 H 1.08994 * 117.50656 * 0.02562 * 11 10 9 24 24 H 1.09005 * 117.49617 * 145.02431 * 11 10 9 25 25 H 1.09009 * 117.49853 * 252.51423 * 12 11 10 26 26 H 1.08993 * 117.50127 * 107.49499 * 12 11 10 27 27 H 1.08996 * 110.30482 * 86.72153 * 15 13 9 28 28 H 1.09000 * 110.30950 * 324.55657 * 15 13 9 29 29 H 1.09001 * 109.82965 * 238.77111 * 17 16 15 30 30 H 1.09004 * 109.90683 * 117.84399 * 17 16 15 31 31 H 0.96696 * 114.00253 * 298.54699 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0654 -1.2167 -0.2290 9 7 1.3569 -2.3698 0.2921 10 6 0.5574 -2.4762 1.5152 11 6 0.4538 -1.2336 2.4016 12 6 1.3008 -2.4256 2.8515 13 6 1.4572 -3.5126 -0.6191 14 1 0.9452 -4.3840 -0.2112 15 6 2.9365 -3.8369 -0.9472 16 8 2.9028 -4.4872 -2.2276 17 6 1.7237 -4.0993 -2.9424 18 6 0.9144 -3.1534 -2.0293 19 1 1.1183 -2.1107 -2.2728 20 8 -0.4843 -3.4309 -2.1216 21 1 -0.4851 0.8385 0.0517 22 1 -0.3175 -3.1229 1.4501 23 1 0.9800 -0.3368 2.0747 24 1 -0.4897 -1.0624 2.9199 25 1 0.9145 -3.0388 3.6658 26 1 2.3845 -2.3132 2.8207 27 1 3.3531 -4.5057 -0.1941 28 1 3.5214 -2.9189 -1.0043 29 1 1.1291 -4.9811 -3.1811 30 1 2.0000 -3.5802 -3.8602 31 1 -0.8524 -3.3064 -3.0071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687951850.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:52 Heat of formation + Delta-G solvation = -37.517964 kcal Electronic energy + Delta-G solvation = -15216.899325 eV Core-core repulsion = 12693.407742 eV Total energy + Delta-G solvation = -2523.491583 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.00803 -36.64345 -35.40676 -32.78422 -31.56746 -28.34082 -27.40034 -24.55191 -21.69743 -21.02995 -20.41776 -19.81518 -16.80760 -16.44981 -16.03926 -15.14557 -14.60074 -14.38118 -14.06109 -13.41582 -12.90161 -12.63185 -12.46386 -11.86131 -11.55424 -11.28809 -11.00575 -10.84503 -10.74914 -10.21670 -10.15819 -9.67053 -9.40051 -9.24857 -8.95498 -8.85029 -8.25141 -6.42086 -5.80282 -3.68392 3.27751 3.34151 3.36503 4.27776 4.43631 4.83985 5.15582 5.22659 5.38120 5.50200 5.69309 5.77011 5.97699 6.15570 6.22235 6.31116 6.43496 6.50072 6.53186 6.63196 6.71747 6.91142 7.01976 7.25738 7.50390 7.61630 7.74094 8.30413 8.50848 9.12470 9.61877 10.32691 11.09028 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.027299 B = 0.013412 C = 0.011692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.441264 B = 2087.127014 C = 2394.218743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.042 3.958 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.293 4.293 8 H 0.057 0.943 9 N -0.533 5.533 10 C 0.151 3.849 11 C -0.151 4.151 12 C -0.243 4.243 13 C 0.159 3.841 14 H 0.073 0.927 15 C 0.037 3.963 16 O -0.391 6.391 17 C 0.019 3.981 18 C 0.061 3.939 19 H 0.087 0.913 20 O -0.549 6.549 21 H 0.256 0.744 22 H 0.079 0.921 23 H 0.106 0.894 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.025 -4.377 -1.889 4.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.163 4.163 3 Si 0.713 3.287 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.422 4.422 8 H 0.075 0.925 9 N -0.250 5.250 10 C 0.043 3.957 11 C -0.190 4.190 12 C -0.284 4.284 13 C 0.050 3.950 14 H 0.091 0.909 15 C -0.041 4.041 16 O -0.310 6.310 17 C -0.059 4.059 18 C -0.001 4.001 19 H 0.105 0.895 20 O -0.352 6.352 21 H 0.066 0.934 22 H 0.097 0.903 23 H 0.125 0.875 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.096 -4.499 -1.395 4.836 hybrid contribution 0.129 1.334 -0.541 1.445 sum 1.225 -3.165 -1.935 3.907 Atomic orbital electron populations 1.70154 1.05408 1.26116 1.47578 1.25536 0.95019 0.98803 0.96918 0.86698 0.79630 0.83622 0.78732 1.20341 1.21337 1.20296 1.18698 0.91265 0.84126 1.48140 0.92544 1.42947 1.55686 1.09454 1.16926 1.20670 0.93633 0.99292 0.82121 1.22938 0.99106 0.94413 1.02508 1.23518 0.98893 1.04853 1.01146 1.21902 0.92265 0.91900 0.88974 0.90912 1.23779 0.99155 0.97333 0.83786 1.88309 1.42416 1.69665 1.30565 1.23804 0.87895 0.98537 0.95627 1.23995 0.80207 0.98313 0.97565 0.89525 1.86574 1.22869 1.91677 1.34056 0.93350 0.90301 0.87544 0.91763 0.91611 0.90083 0.90486 0.90840 0.91749 0.92389 0.79216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.35 11.57 55.49 0.64 -22.71 16 2 C 0.04 1.10 3.15 -17.43 -0.05 1.04 16 3 Si 0.89 20.42 29.45 -169.99 -5.01 15.42 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.29 -7.53 7.24 -15.06 -0.11 -7.64 16 8 H 0.06 1.47 6.60 -52.48 -0.35 1.12 16 9 N -0.53 -12.91 2.72 -155.62 -0.42 -13.33 16 10 C 0.15 3.55 6.02 -67.93 -0.41 3.14 16 11 C -0.15 -3.51 8.34 -26.74 -0.22 -3.74 16 12 C -0.24 -5.12 10.37 -26.73 -0.28 -5.40 16 13 C 0.16 3.44 3.39 -65.67 -0.22 3.21 16 14 H 0.07 1.56 8.00 -51.93 -0.42 1.15 16 15 C 0.04 0.74 7.32 38.19 0.28 1.02 16 16 O -0.39 -7.61 11.36 -35.23 -0.40 -8.01 16 17 C 0.02 0.34 7.57 37.88 0.29 0.62 16 18 C 0.06 1.24 3.96 -24.78 -0.10 1.15 16 19 H 0.09 2.02 7.33 -51.93 -0.38 1.64 16 20 O -0.55 -10.93 13.40 -35.23 -0.47 -11.40 16 21 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 22 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 23 H 0.11 2.72 5.09 -51.93 -0.26 2.45 16 24 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 25 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 26 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 27 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.07 1.55 6.31 -51.93 -0.33 1.22 16 29 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.36 5.37 9.11 45.56 0.42 5.79 16 LS Contribution 254.85 15.07 3.84 3.84 Total: -1.00 -28.48 254.85 -6.06 -34.54 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.41 Total: 8.24 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.83 Total: -6.58 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.22 Total: -36.04 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.87 Total: -19.41 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.01 Total: 15.42 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.48 -6.06 -34.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687951850.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.983 kcal (2) G-P(sol) polarization free energy of solvation -28.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds