Wall clock time and date at job start Mon Mar 30 2020 02:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00212 * 2 1 4 4 H 1.48501 * 109.46874 * 239.99755 * 3 2 1 5 5 H 1.48498 * 109.47260 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46882 * 119.99907 * 3 2 1 7 7 C 1.38813 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99926 * 165.79534 * 7 2 1 9 9 N 1.36931 * 120.00382 * 345.79357 * 7 2 1 10 10 C 1.46507 * 120.00042 * 307.79491 * 9 7 2 11 11 C 1.52992 * 117.49395 * 1.99806 * 10 9 7 12 12 C 1.52996 * 60.00187 * 252.51557 * 11 10 9 13 13 C 1.46497 * 120.00311 * 127.78726 * 9 7 2 14 14 H 1.08995 * 111.02510 * 175.77913 * 13 9 7 15 15 C 1.54956 * 111.12358 * 51.55856 * 13 9 7 16 16 O 1.43643 * 105.13767 * 205.63660 * 15 13 9 17 17 C 1.43239 * 109.96966 * 24.42935 * 16 15 13 18 18 C 1.54380 * 107.59296 * 358.28889 * 17 16 15 19 19 H 1.09000 * 110.84958 * 97.03018 * 18 17 16 20 20 O 1.42898 * 110.84809 * 220.45371 * 18 17 16 21 21 H 0.97011 * 120.00079 * 356.47389 * 1 2 3 22 22 H 1.08992 * 115.54867 * 147.71300 * 10 9 7 23 23 H 1.08994 * 117.50656 * 0.02562 * 11 10 9 24 24 H 1.09005 * 117.49617 * 145.02431 * 11 10 9 25 25 H 1.09009 * 117.49853 * 252.51423 * 12 11 10 26 26 H 1.08993 * 117.50127 * 107.49499 * 12 11 10 27 27 H 1.08996 * 110.30482 * 86.72153 * 15 13 9 28 28 H 1.09000 * 110.30950 * 324.55657 * 15 13 9 29 29 H 1.09001 * 109.82965 * 238.77111 * 17 16 15 30 30 H 1.09004 * 109.90683 * 117.84399 * 17 16 15 31 31 H 0.96696 * 114.00253 * 298.54699 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0654 -1.2167 -0.2290 9 7 1.3569 -2.3698 0.2921 10 6 0.5574 -2.4762 1.5152 11 6 0.4538 -1.2336 2.4016 12 6 1.3008 -2.4256 2.8515 13 6 1.4572 -3.5126 -0.6191 14 1 0.9452 -4.3840 -0.2112 15 6 2.9365 -3.8369 -0.9472 16 8 2.9028 -4.4872 -2.2276 17 6 1.7237 -4.0993 -2.9424 18 6 0.9144 -3.1534 -2.0293 19 1 1.1183 -2.1107 -2.2728 20 8 -0.4843 -3.4309 -2.1216 21 1 -0.4851 0.8385 0.0517 22 1 -0.3175 -3.1229 1.4501 23 1 0.9800 -0.3368 2.0747 24 1 -0.4897 -1.0624 2.9199 25 1 0.9145 -3.0388 3.6658 26 1 2.3845 -2.3132 2.8207 27 1 3.3531 -4.5057 -0.1941 28 1 3.5214 -2.9189 -1.0043 29 1 1.1291 -4.9811 -3.1811 30 1 2.0000 -3.5802 -3.8602 31 1 -0.8524 -3.3064 -3.0071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687951850.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:52 Heat of formation + Delta-G solvation = -58.264524 kcal Electronic energy + Delta-G solvation = -15217.798963 eV Core-core repulsion = 12693.407742 eV Total energy + Delta-G solvation = -2524.391222 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.60156 -38.42421 -36.97263 -34.60101 -33.44381 -29.94852 -29.06000 -26.46312 -23.25485 -22.77898 -22.14516 -21.64156 -18.46995 -18.26014 -17.68902 -16.75744 -16.50410 -16.03806 -15.72322 -15.12651 -14.58816 -14.25851 -14.11597 -13.50911 -13.36007 -13.07734 -12.81454 -12.64228 -12.46112 -12.02884 -11.97227 -11.35948 -11.15971 -10.86346 -10.71027 -10.42987 -10.19873 -8.34886 -7.72700 -5.67253 1.43349 1.46568 1.51203 2.42708 2.86268 3.19330 3.25966 3.53378 3.73000 3.86005 4.14947 4.28163 4.37368 4.42783 4.59979 4.69012 4.74378 4.82483 4.91668 5.00199 5.03773 5.15175 5.30598 5.49728 5.68877 5.77117 5.98674 6.51963 6.95899 7.20592 7.73050 8.40100 9.10628 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.027299 B = 0.013412 C = 0.011692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.441264 B = 2087.127014 C = 2394.218743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.008 3.992 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.292 4.292 8 H 0.051 0.949 9 N -0.546 5.546 10 C 0.130 3.870 11 C -0.161 4.161 12 C -0.211 4.211 13 C 0.148 3.852 14 H 0.074 0.926 15 C 0.049 3.951 16 O -0.396 6.396 17 C 0.027 3.973 18 C 0.066 3.934 19 H 0.052 0.948 20 O -0.564 6.564 21 H 0.251 0.749 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.501 -5.211 -1.968 5.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.195 4.195 3 Si 0.764 3.236 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.422 4.422 8 H 0.068 0.932 9 N -0.264 5.264 10 C 0.022 3.978 11 C -0.199 4.199 12 C -0.252 4.252 13 C 0.040 3.960 14 H 0.092 0.908 15 C -0.029 4.029 16 O -0.315 6.315 17 C -0.050 4.050 18 C 0.005 3.995 19 H 0.070 0.930 20 O -0.371 6.371 21 H 0.061 0.939 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.581 -5.346 -1.492 5.771 hybrid contribution -0.054 1.539 -0.541 1.632 sum 1.527 -3.806 -2.033 4.578 Atomic orbital electron populations 1.70259 1.06503 1.26214 1.49239 1.26013 0.95491 1.01028 0.96921 0.85878 0.78469 0.80585 0.78634 1.20032 1.21711 1.20120 1.18783 0.91095 0.84999 1.47362 0.93193 1.43057 1.55774 1.09665 1.17880 1.20798 0.94364 0.99641 0.82996 1.22829 0.99856 0.93901 1.03362 1.23458 0.98200 1.03159 1.00378 1.22069 0.93598 0.91105 0.89257 0.90751 1.23612 0.97664 0.97151 0.84475 1.88299 1.43226 1.69604 1.30385 1.23830 0.87067 0.98915 0.95212 1.23723 0.81001 0.97152 0.97672 0.92968 1.86519 1.22691 1.91563 1.36288 0.93916 0.90523 0.89989 0.90968 0.88485 0.90663 0.88748 0.92435 0.89425 0.90475 0.76727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.77 11.57 21.65 0.25 -48.51 16 2 C 0.01 0.41 3.15 84.86 0.27 0.67 16 3 Si 0.94 42.22 29.45 68.60 2.02 44.24 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.29 -15.07 7.24 84.03 0.61 -14.46 16 8 H 0.05 2.61 6.60 -2.91 -0.02 2.60 16 9 N -0.55 -26.29 2.72 -646.25 -1.76 -28.04 16 10 C 0.13 6.02 6.02 44.99 0.27 6.29 16 11 C -0.16 -7.39 8.34 30.59 0.26 -7.14 16 12 C -0.21 -8.51 10.37 30.59 0.32 -8.19 16 13 C 0.15 6.29 3.39 46.46 0.16 6.45 16 14 H 0.07 3.11 8.00 -2.39 -0.02 3.09 16 15 C 0.05 1.87 7.32 72.65 0.53 2.40 16 16 O -0.40 -14.55 11.36 -148.98 -1.69 -16.24 16 17 C 0.03 0.89 7.57 72.45 0.55 1.44 16 18 C 0.07 2.65 3.96 31.86 0.13 2.78 16 19 H 0.05 2.46 7.33 -2.39 -0.02 2.44 16 20 O -0.56 -21.84 13.40 -148.98 -2.00 -23.84 16 21 H 0.25 13.59 8.32 -92.70 -0.77 12.82 16 22 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 23 H 0.08 4.19 5.09 -2.39 -0.01 4.18 16 24 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 25 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 26 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 27 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 28 H 0.06 2.39 6.31 -2.39 -0.02 2.37 16 29 H 0.09 2.51 8.05 -2.39 -0.02 2.49 16 30 H 0.08 2.25 8.14 -2.38 -0.02 2.24 16 31 H 0.38 10.80 9.11 -74.06 -0.67 10.13 16 Total: -1.00 -59.36 254.85 0.36 -59.00 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.46 Total: 23.16 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 3.08 Total: -9.77 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -1.51 Total: -76.56 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -3.69 Total: -40.08 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.02 Total: 44.24 kcal Total: -59.36 0.36 -59.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687951850.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.735 kcal (2) G-P(sol) polarization free energy of solvation -59.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds