Wall clock time and date at job start Mon Mar 30 2020 03:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47133 * 2 1 4 4 H 1.09000 * 109.86642 * 306.00746 * 3 2 1 5 5 C 1.54098 * 109.87723 * 185.00194 * 3 2 1 6 6 C 1.54813 * 104.30472 * 238.48010 * 5 3 2 7 7 H 1.08999 * 110.90868 * 97.38351 * 6 5 3 8 8 N 1.46500 * 110.90801 * 220.98806 * 6 5 3 9 9 C 1.34773 * 119.99752 * 204.99478 * 8 6 5 10 10 O 1.21687 * 120.00426 * 0.02562 * 9 8 6 11 11 C 1.46374 * 119.99758 * 180.02562 * 9 8 6 12 12 H 1.08004 * 120.00099 * 0.02562 * 11 9 8 13 13 C 1.40050 * 119.99934 * 180.02562 * 11 9 8 14 14 N 1.30669 * 120.00076 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99958 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47134 * 59.99945 * 15 13 11 17 17 H 1.48500 * 109.47232 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47229 * 300.00264 * 15 13 11 19 19 C 1.55227 * 101.98357 * 339.26359 * 6 5 3 20 20 O 1.43744 * 109.87631 * 67.17059 * 3 2 1 21 21 H 1.08997 * 109.47068 * 299.99783 * 1 2 3 22 22 H 1.09007 * 109.47226 * 60.00140 * 1 2 3 23 23 H 1.08997 * 109.47192 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46561 * 240.00196 * 2 1 3 25 25 H 1.08996 * 109.47231 * 120.00309 * 2 1 3 26 26 H 1.09002 * 110.48969 * 357.22346 * 5 3 2 27 27 H 1.09002 * 110.48612 * 119.74013 * 5 3 2 28 28 H 0.96993 * 119.99923 * 25.00219 * 8 6 5 29 29 H 0.97003 * 119.99883 * 179.97438 * 14 13 11 30 30 H 1.09002 * 110.51777 * 278.38206 * 19 6 5 31 31 H 1.09000 * 110.77540 * 155.50397 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9926 -0.8293 5 6 3.5758 1.4553 -0.1264 6 6 4.0575 2.2052 1.1395 7 1 4.3512 1.5028 1.9195 8 7 5.1576 3.1181 0.8193 9 6 6.0374 3.4747 1.7760 10 8 5.9183 3.0380 2.9056 11 6 7.1362 4.3873 1.4563 12 1 7.2417 4.7753 0.4539 13 6 8.0508 4.7574 2.4503 14 7 7.9235 4.2877 3.6630 15 14 9.4536 5.9215 2.0421 16 1 8.9008 7.2142 1.5639 17 1 10.2744 6.1530 3.2578 18 1 10.3010 5.3223 0.9800 19 6 2.7841 2.9908 1.5528 20 8 1.7084 2.0781 1.2459 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.9661 0.4376 -0.1386 27 1 3.8801 1.9905 -1.0258 28 1 5.2527 3.4660 -0.0810 29 1 8.5572 4.5437 4.3513 30 1 2.6916 3.9045 0.9657 31 1 2.8004 3.2206 2.6182 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688428988.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:11 Heat of formation + Delta-G solvation = -100.570923 kcal Electronic energy + Delta-G solvation = -14262.278839 eV Core-core repulsion = 11736.053075 eV Total energy + Delta-G solvation = -2526.225765 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.40618 -37.00007 -33.64233 -33.23275 -32.33895 -29.83458 -27.64524 -25.91977 -23.36827 -21.38871 -20.69088 -19.62077 -17.34507 -16.03785 -15.62014 -15.24435 -15.06275 -14.07567 -13.77197 -13.54443 -13.14348 -13.07180 -12.47156 -12.22225 -11.89639 -11.46094 -11.18372 -11.14242 -10.98306 -10.74632 -10.58338 -10.43310 -10.35779 -10.23903 -9.39749 -8.87369 -7.68260 -7.57279 -6.21833 -4.68279 3.14171 3.19204 3.21020 4.02717 4.17359 4.52680 4.78400 4.87066 4.93230 5.20052 5.28370 5.39917 5.50793 5.63803 5.75051 5.85993 5.90258 5.93813 6.01634 6.09905 6.25871 6.33180 6.43914 6.57340 7.20066 7.40154 7.86714 8.04146 8.28367 8.98900 9.47021 10.55963 10.73881 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.085429 B = 0.006059 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.680760 B = 4620.315136 C = 4726.451503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.078 3.922 4 H 0.063 0.937 5 C -0.161 4.161 6 C 0.129 3.871 7 H 0.093 0.907 8 N -0.756 5.756 9 C 0.553 3.447 10 O -0.579 6.579 11 C -0.546 4.546 12 H 0.067 0.933 13 C 0.088 3.912 14 N -0.767 5.767 15 Si 0.909 3.091 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.035 3.965 20 O -0.377 6.377 21 H 0.061 0.939 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.381 0.619 29 H 0.269 0.731 30 H 0.057 0.943 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.538 -4.212 -8.482 12.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.020 3.980 4 H 0.081 0.919 5 C -0.199 4.199 6 C 0.021 3.979 7 H 0.111 0.889 8 N -0.411 5.411 9 C 0.358 3.642 10 O -0.461 6.461 11 C -0.583 4.583 12 H 0.086 0.914 13 C -0.132 4.132 14 N -0.395 5.395 15 Si 0.733 3.267 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.193 1.193 19 C -0.043 4.043 20 O -0.295 6.295 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.213 0.787 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.740 -4.591 -7.307 12.282 hybrid contribution 0.934 0.838 -0.819 1.498 sum -7.805 -3.754 -8.126 11.876 Atomic orbital electron populations 1.21716 0.95608 1.01132 1.02148 1.21725 0.96486 0.95306 1.02497 1.22677 0.93911 0.93731 0.87694 0.91916 1.23254 0.95203 1.02064 0.99400 1.22021 0.87692 0.92259 0.95885 0.88875 1.46121 1.29831 1.51389 1.13770 1.18270 0.81225 0.81358 0.83391 1.90606 1.75815 1.58462 1.21264 1.20845 1.11003 1.29186 0.97237 0.91432 1.25707 0.97869 0.95315 0.94337 1.70006 1.32386 1.35472 1.01683 0.86419 0.80879 0.80880 0.78475 1.19268 1.20526 1.19286 1.24120 0.85902 0.92400 1.01897 1.88838 1.44014 1.57640 1.39038 0.92002 0.93100 0.93084 0.91123 0.91103 0.90331 0.90595 0.78676 0.91981 0.92491 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.83 37.16 0.37 -1.23 16 2 C -0.12 -1.44 5.42 -26.73 -0.14 -1.59 16 3 C 0.08 1.08 3.41 -26.16 -0.09 1.00 16 4 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 5 C -0.16 -2.36 6.38 -25.20 -0.16 -2.52 16 6 C 0.13 2.50 3.51 -65.80 -0.23 2.27 16 7 H 0.09 2.07 7.54 -51.93 -0.39 1.68 16 8 N -0.76 -16.64 5.19 -53.15 -0.28 -16.91 16 9 C 0.55 15.57 7.75 -12.99 -0.10 15.47 16 10 O -0.58 -18.60 14.66 5.20 0.08 -18.52 16 11 C -0.55 -15.27 9.54 -35.63 -0.34 -15.61 16 12 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 13 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 14 N -0.77 -22.91 11.83 55.55 0.66 -22.25 16 15 Si 0.91 19.97 29.56 -169.99 -5.02 14.95 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 C 0.03 0.64 7.42 38.34 0.28 0.93 16 20 O -0.38 -6.41 10.84 -35.23 -0.38 -6.79 16 21 H 0.06 0.74 7.91 -51.93 -0.41 0.33 16 22 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 1.08 7.70 -51.93 -0.40 0.68 16 27 H 0.08 1.01 7.77 -51.93 -0.40 0.61 16 28 H 0.38 7.32 8.38 -40.82 -0.34 6.98 16 29 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 264.59 15.07 3.99 3.99 Total: -1.00 -32.99 264.59 -5.93 -38.92 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.45 Total: 5.57 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.51 Total: 1.06 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.38 Total: -39.16 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.31 Total: -25.32 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.99 -5.93 -38.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688428988.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.656 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds