Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53005 * 109.47001 * 2 1 4 4 H 1.08997 * 110.67606 * 56.50939 * 3 2 1 5 5 C 1.54988 * 110.61423 * 179.47626 * 3 2 1 6 6 C 1.54817 * 102.09139 * 155.52273 * 5 3 2 7 7 H 1.09002 * 110.59904 * 97.85038 * 6 5 3 8 8 N 1.46499 * 110.48949 * 220.44265 * 6 5 3 9 9 C 1.34777 * 119.99665 * 201.49903 * 8 6 5 10 10 O 1.21683 * 120.00206 * 359.72112 * 9 8 6 11 11 C 1.46375 * 119.99876 * 179.72458 * 9 8 6 12 12 H 1.08002 * 119.99626 * 359.97438 * 11 9 8 13 13 C 1.40042 * 120.00353 * 179.97438 * 11 9 8 14 14 N 1.30674 * 119.99645 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00470 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47393 * 89.99696 * 15 13 11 17 17 H 1.48494 * 109.47332 * 209.99782 * 15 13 11 18 18 H 1.48501 * 109.47048 * 329.99939 * 15 13 11 19 19 C 1.54094 * 104.18543 * 339.12138 * 6 5 3 20 20 O 1.43746 * 107.29727 * 357.96853 * 19 6 5 21 21 H 1.09000 * 109.46905 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47047 * 300.00056 * 1 2 3 23 23 H 1.08998 * 109.46988 * 60.00073 * 1 2 3 24 24 H 1.08997 * 109.47047 * 239.99944 * 2 1 3 25 25 H 1.08998 * 109.46988 * 119.99927 * 2 1 3 26 26 H 1.09004 * 110.91365 * 37.32804 * 5 3 2 27 27 H 1.09004 * 110.91107 * 273.71989 * 5 3 2 28 28 H 0.97001 * 119.99790 * 21.21616 * 8 6 5 29 29 H 0.97004 * 119.99544 * 180.02562 * 14 13 11 30 30 H 1.09005 * 109.88204 * 117.39374 * 19 6 5 31 31 H 1.08999 * 109.87698 * 238.54466 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6378 1.9930 0.8505 5 6 3.5896 1.4735 0.0133 6 6 3.8917 2.8556 -0.6156 7 1 4.0870 3.5956 0.1605 8 7 5.0303 2.7637 -1.5328 9 6 5.7318 3.8703 -1.8491 10 8 5.4162 4.9464 -1.3768 11 6 6.8731 3.7776 -2.7609 12 1 7.1534 2.8224 -3.1798 13 6 7.6017 4.9274 -3.0900 14 7 7.2622 6.0832 -2.5836 15 14 9.0587 4.8090 -4.2530 16 1 8.5943 5.0048 -5.6499 17 1 10.0523 5.8579 -3.9101 18 1 9.6877 3.4700 -4.1236 19 6 2.6052 3.2091 -1.3865 20 8 1.7005 2.1018 -1.2388 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 4.0001 0.6699 -0.5982 27 1 3.9711 1.4183 1.0329 28 1 5.2819 1.9059 -1.9093 29 1 7.7667 6.8797 -2.8118 30 1 2.1584 4.1111 -0.9682 31 1 2.8351 3.3617 -2.4410 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688428990.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = -124.632115 kcal Electronic energy + Delta-G solvation = -14281.653645 eV Core-core repulsion = 11754.384509 eV Total energy + Delta-G solvation = -2527.269136 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.83749 -38.96366 -35.30842 -34.50513 -34.36247 -31.41079 -29.12305 -27.90244 -24.65659 -22.85244 -22.07399 -21.06242 -19.27641 -17.79561 -17.36395 -17.00959 -16.49775 -15.90429 -15.30068 -14.82105 -14.40089 -14.29782 -14.16734 -13.83942 -13.24099 -12.88557 -12.79479 -12.62759 -12.54146 -12.39914 -12.12493 -12.01386 -11.74762 -11.50090 -10.94702 -10.71265 -9.89206 -9.50385 -8.30698 -6.87662 1.40392 1.41587 1.57087 2.23956 2.44490 2.83101 3.06824 3.48283 3.69065 3.82358 4.07288 4.11946 4.26098 4.32966 4.44639 4.59948 4.75986 4.77748 4.95537 5.00814 5.08321 5.12483 5.28049 5.30891 5.46780 5.82940 5.94975 6.19455 6.25721 6.85438 7.50769 8.46549 8.65316 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.074719 B = 0.006201 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.647747 B = 4514.180228 C = 4650.359487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.071 3.929 4 H 0.077 0.923 5 C -0.142 4.142 6 C 0.119 3.881 7 H 0.062 0.938 8 N -0.745 5.745 9 C 0.537 3.463 10 O -0.630 6.630 11 C -0.574 4.574 12 H 0.088 0.912 13 C 0.029 3.971 14 N -0.821 5.821 15 Si 0.999 3.001 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.248 1.248 19 C 0.046 3.954 20 O -0.386 6.386 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.042 0.958 24 H 0.067 0.933 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.396 0.604 29 H 0.275 0.725 30 H 0.052 0.948 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.822 -12.379 3.708 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C 0.013 3.987 4 H 0.095 0.905 5 C -0.180 4.180 6 C 0.013 3.987 7 H 0.080 0.920 8 N -0.399 5.399 9 C 0.342 3.658 10 O -0.517 6.517 11 C -0.611 4.611 12 H 0.106 0.894 13 C -0.186 4.186 14 N -0.451 5.451 15 Si 0.818 3.182 16 H -0.187 1.187 17 H -0.198 1.198 18 H -0.172 1.172 19 C -0.033 4.033 20 O -0.305 6.305 21 H 0.089 0.911 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.230 0.770 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.209 -11.488 3.942 14.124 hybrid contribution 0.780 0.331 -0.525 0.997 sum -6.428 -11.157 3.417 13.322 Atomic orbital electron populations 1.21711 0.94969 1.02257 1.01687 1.21580 0.96952 0.92600 1.03730 1.23402 0.92867 0.95358 0.87046 0.90497 1.23403 0.96646 0.95138 1.02829 1.21966 0.86406 0.98406 0.91951 0.91958 1.45881 1.32455 1.10837 1.50723 1.18631 0.83232 0.82380 0.81574 1.90553 1.72420 1.29813 1.58903 1.21445 1.13823 0.96437 1.29357 0.89427 1.26970 1.00942 0.93836 0.96850 1.70186 1.37389 1.00224 1.37279 0.85006 0.76107 0.79495 0.77605 1.18712 1.19760 1.17166 1.23464 0.89852 0.89392 1.00589 1.88832 1.56062 1.43864 1.41761 0.91146 0.92286 0.93914 0.91442 0.88196 0.89012 0.88059 0.76999 0.91536 0.93023 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.83 71.99 0.71 -1.99 16 2 C -0.11 -2.13 5.71 30.60 0.17 -1.96 16 3 C 0.07 1.80 3.33 31.28 0.10 1.90 16 4 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 5 C -0.14 -3.87 6.30 31.89 0.20 -3.66 16 6 C 0.12 4.65 3.35 45.98 0.15 4.81 16 7 H 0.06 2.74 7.66 -2.39 -0.02 2.73 16 8 N -0.74 -33.55 5.04 -442.13 -2.23 -35.78 16 9 C 0.54 31.21 7.74 86.36 0.67 31.88 16 10 O -0.63 -42.15 14.73 -4.29 -0.06 -42.21 16 11 C -0.57 -32.58 9.54 24.83 0.24 -32.34 16 12 H 0.09 4.45 7.85 -2.91 -0.02 4.42 16 13 C 0.03 1.63 5.50 85.30 0.47 2.10 16 14 N -0.82 -50.41 11.83 21.83 0.26 -50.15 16 15 Si 1.00 40.89 29.56 68.60 2.03 42.91 16 16 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 17 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 18 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 19 C 0.05 1.77 7.50 72.35 0.54 2.31 16 20 O -0.39 -12.91 10.89 -148.98 -1.62 -14.54 16 21 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.04 0.93 7.92 -2.39 -0.02 0.91 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.09 2.30 7.66 -2.38 -0.02 2.28 16 27 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.40 15.44 8.33 -92.71 -0.77 14.66 16 29 H 0.27 15.25 8.29 -92.71 -0.77 14.48 16 30 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.06 2.77 7.93 -2.39 -0.02 2.75 16 Total: -1.00 -73.99 264.80 1.97 -72.02 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.35 Total: 24.71 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 3.26 Total: 3.03 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -1.97 Total: -85.93 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -1.69 Total: -56.75 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Total: -73.99 1.97 -72.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688428990.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.616 kcal (2) G-P(sol) polarization free energy of solvation -73.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds