Wall clock time and date at job start Mon Mar 30 2020 02:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.50133 * 300.07876 * 10 9 7 12 12 O 1.20820 * 119.99896 * 239.99804 * 11 10 9 13 13 O 1.34226 * 119.99915 * 60.00111 * 11 10 9 14 14 C 1.53116 * 109.50504 * 180.02562 * 10 9 7 15 15 C 1.53119 * 109.16296 * 182.40582 * 14 10 9 16 16 C 1.53039 * 109.27905 * 57.65020 * 15 14 10 17 17 N 1.46847 * 109.52456 * 300.82357 * 16 15 14 18 18 C 1.46845 * 111.19687 * 61.74043 * 17 16 15 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 0.96701 * 117.00191 * 179.97438 * 13 11 10 23 23 H 1.09004 * 109.52123 * 302.30553 * 14 10 9 24 24 H 1.08994 * 109.52621 * 62.43550 * 14 10 9 25 25 H 1.08997 * 109.50678 * 177.59554 * 15 14 10 26 26 H 1.09000 * 109.50093 * 297.71266 * 15 14 10 27 27 H 1.09002 * 109.46230 * 60.83969 * 16 15 14 28 28 H 1.08998 * 109.45895 * 180.81894 * 16 15 14 29 29 H 1.00897 * 111.00160 * 185.83504 * 17 16 15 30 30 H 1.08998 * 109.46601 * 178.24160 * 18 17 16 31 31 H 1.09007 * 109.46431 * 58.27491 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 3.1133 -3.5819 -1.2298 12 8 3.1192 -4.4910 -2.0256 13 8 3.8800 -2.5005 -1.4406 14 6 1.4804 -4.9886 -0.0012 15 6 2.4812 -6.1458 0.0595 16 6 3.3510 -5.9966 1.3099 17 7 4.0622 -4.7128 1.2626 18 6 3.1219 -3.5849 1.2515 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 4.4200 -2.4947 -2.2427 23 1 0.8225 -5.0301 0.8669 24 1 0.8869 -5.0664 -0.9121 25 1 1.9415 -7.0919 0.1024 26 1 3.1136 -6.1270 -0.8280 27 1 2.7194 -6.0294 2.1977 28 1 4.0743 -6.8111 1.3483 29 1 4.7144 -4.6323 2.0282 30 1 3.6786 -2.6479 1.2478 31 1 2.4913 -3.6290 2.1396 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691809751.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:39 Heat of formation + Delta-G solvation = -104.111154 kcal Electronic energy + Delta-G solvation = -15217.850604 eV Core-core repulsion = 12691.471323 eV Total energy + Delta-G solvation = -2526.379281 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.07514 -37.41099 -35.18225 -33.69986 -31.82901 -30.99134 -26.88167 -23.96137 -23.46121 -22.49526 -20.59362 -18.80026 -17.06875 -16.37999 -16.04626 -14.99025 -14.68840 -14.21373 -14.06926 -13.56988 -13.01369 -12.86179 -12.44281 -12.00052 -11.66068 -11.45684 -11.19481 -10.96658 -10.73870 -10.66870 -10.22844 -10.20816 -9.91722 -9.39392 -9.21477 -8.95944 -8.37424 -8.10800 -6.00523 -4.00959 3.25123 3.32936 3.39963 3.44786 4.03005 4.47157 4.59775 5.24895 5.30749 5.36337 5.45236 5.69950 5.80292 5.99941 6.03280 6.19908 6.26856 6.35987 6.52275 6.56879 6.78183 6.88269 7.35563 7.42473 7.52122 7.55279 7.71995 8.01021 8.33381 8.90595 9.08942 9.63009 11.11124 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040928 B = 0.010416 C = 0.010173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.968086 B = 2687.565900 C = 2751.720920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.289 1.289 7 C -0.513 4.513 8 H 0.079 0.921 9 C 0.032 3.968 10 C -0.041 4.041 11 C 0.523 3.477 12 O -0.548 6.548 13 O -0.486 6.486 14 C -0.102 4.102 15 C -0.130 4.130 16 C 0.058 3.942 17 N -0.698 5.698 18 C 0.077 3.923 19 H 0.260 0.740 20 H 0.032 0.968 21 H 0.023 0.977 22 H 0.384 0.616 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.025 0.975 28 H 0.065 0.935 29 H 0.338 0.662 30 H 0.097 0.903 31 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.938 -7.846 2.327 10.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.209 1.209 5 H -0.196 1.196 6 H -0.215 1.215 7 C -0.551 4.551 8 H 0.097 0.903 9 C -0.006 4.006 10 C -0.043 4.043 11 C 0.368 3.632 12 O -0.440 6.440 13 O -0.294 6.294 14 C -0.139 4.139 15 C -0.168 4.168 16 C -0.071 4.071 17 N -0.329 5.329 18 C -0.051 4.051 19 H 0.069 0.931 20 H 0.050 0.950 21 H 0.041 0.959 22 H 0.240 0.760 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.115 0.885 31 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.612 -7.974 1.804 9.916 hybrid contribution 0.322 0.969 0.391 1.094 sum 5.933 -7.004 2.195 9.438 Atomic orbital electron populations 1.69972 1.06116 1.26615 1.51153 1.25010 0.94737 0.99279 0.95447 0.86583 0.79994 0.83399 0.77971 1.20854 1.19632 1.21532 1.21442 0.93950 0.89904 1.49844 0.90270 1.19225 0.92736 0.90197 0.98432 1.20758 0.94946 0.98501 0.90085 1.23095 0.76225 0.77421 0.86439 1.90513 1.66057 1.39373 1.48024 1.84886 1.54633 1.43359 1.46484 1.21526 0.97299 0.92913 1.02190 1.21823 0.98093 0.97553 0.99300 1.21926 0.96338 0.91708 0.97131 1.60348 1.19637 1.02295 1.50631 1.21965 0.93839 0.93980 0.95359 0.93080 0.95000 0.95896 0.76017 0.91603 0.91411 0.92381 0.89162 0.95673 0.91606 0.84425 0.88484 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.51 -13.59 7.34 -34.44 -0.25 -13.85 16 8 H 0.08 2.04 4.87 -52.49 -0.26 1.79 16 9 C 0.03 0.78 4.04 -27.89 -0.11 0.67 16 10 C -0.04 -0.85 0.51 -155.58 -0.08 -0.93 16 11 C 0.52 11.13 6.23 36.01 0.22 11.35 16 12 O -0.55 -12.14 14.56 -18.75 -0.27 -12.41 16 13 O -0.49 -9.70 10.51 -39.25 -0.41 -10.11 16 14 C -0.10 -1.87 4.43 -26.61 -0.12 -1.99 16 15 C -0.13 -2.11 5.77 -26.65 -0.15 -2.27 16 16 C 0.06 0.85 6.55 -3.83 -0.03 0.82 16 17 N -0.70 -11.03 6.45 -113.81 -0.73 -11.77 16 18 C 0.08 1.42 4.95 -3.83 -0.02 1.40 16 19 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 20 H 0.03 0.82 8.14 -51.92 -0.42 0.40 16 21 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.38 5.78 9.10 45.56 0.41 6.20 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.68 5.76 -51.93 -0.30 1.38 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.34 4.47 8.90 -39.29 -0.35 4.12 16 30 H 0.10 1.91 6.63 -51.93 -0.34 1.57 16 31 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 LS Contribution 249.54 15.07 3.76 3.76 Total: -1.00 -30.81 249.54 -5.92 -36.73 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.34 Total: 6.43 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -0.63 Total: -3.34 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.00 Total: -37.29 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.69 Total: -22.52 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.81 -5.92 -36.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691809751.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.379 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds