Wall clock time and date at job start Mon Mar 30 2020 02:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.50133 * 300.07876 * 10 9 7 12 12 O 1.20820 * 119.99896 * 239.99804 * 11 10 9 13 13 O 1.34226 * 119.99915 * 60.00111 * 11 10 9 14 14 C 1.53116 * 109.50504 * 180.02562 * 10 9 7 15 15 C 1.53119 * 109.16296 * 182.40582 * 14 10 9 16 16 C 1.53039 * 109.27905 * 57.65020 * 15 14 10 17 17 N 1.46847 * 109.52456 * 300.82357 * 16 15 14 18 18 C 1.46845 * 111.19687 * 61.74043 * 17 16 15 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 0.96701 * 117.00191 * 179.97438 * 13 11 10 23 23 H 1.09004 * 109.52123 * 302.30553 * 14 10 9 24 24 H 1.08994 * 109.52621 * 62.43550 * 14 10 9 25 25 H 1.08997 * 109.50678 * 177.59554 * 15 14 10 26 26 H 1.09000 * 109.50093 * 297.71266 * 15 14 10 27 27 H 1.09002 * 109.46230 * 60.83969 * 16 15 14 28 28 H 1.08998 * 109.45895 * 180.81894 * 16 15 14 29 29 H 1.00897 * 111.00160 * 185.83504 * 17 16 15 30 30 H 1.08998 * 109.46601 * 178.24160 * 18 17 16 31 31 H 1.09007 * 109.46431 * 58.27491 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 3.1133 -3.5819 -1.2298 12 8 3.1192 -4.4910 -2.0256 13 8 3.8800 -2.5005 -1.4406 14 6 1.4804 -4.9886 -0.0012 15 6 2.4812 -6.1458 0.0595 16 6 3.3510 -5.9966 1.3099 17 7 4.0622 -4.7128 1.2626 18 6 3.1219 -3.5849 1.2515 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 4.4200 -2.4947 -2.2427 23 1 0.8225 -5.0301 0.8669 24 1 0.8869 -5.0664 -0.9121 25 1 1.9415 -7.0919 0.1024 26 1 3.1136 -6.1270 -0.8280 27 1 2.7194 -6.0294 2.1977 28 1 4.0743 -6.8111 1.3483 29 1 4.7144 -4.6323 2.0282 30 1 3.6786 -2.6479 1.2478 31 1 2.4913 -3.6290 2.1396 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691809751.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:38 Heat of formation + Delta-G solvation = -126.898399 kcal Electronic energy + Delta-G solvation = -15218.838733 eV Core-core repulsion = 12691.471323 eV Total energy + Delta-G solvation = -2527.367410 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.68188 -38.89207 -36.84399 -35.51024 -33.58899 -32.43504 -28.72220 -25.61423 -24.98789 -24.22787 -22.06513 -20.34846 -18.80835 -18.22741 -17.55900 -16.68167 -16.35580 -16.01565 -15.40003 -14.95096 -14.68668 -14.39175 -14.07195 -13.52610 -13.49043 -13.18534 -12.86987 -12.68887 -12.48907 -12.38541 -11.89143 -11.69616 -11.49783 -11.11428 -10.93248 -10.82491 -10.49213 -9.35907 -8.11787 -6.17940 1.45523 1.46834 1.56152 1.58760 2.46839 2.50470 3.21440 3.37750 3.78716 3.94164 4.13531 4.27734 4.52123 4.59675 4.72236 4.75664 4.81263 4.95090 5.05792 5.11804 5.29393 5.42570 5.44236 5.55934 5.89405 5.92436 6.07457 6.26873 6.58966 6.97961 7.35449 7.49939 9.00584 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040928 B = 0.010416 C = 0.010173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.968086 B = 2687.565900 C = 2751.720920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.001 4.001 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.261 1.261 6 H -0.292 1.292 7 C -0.514 4.514 8 H 0.088 0.912 9 C 0.040 3.960 10 C -0.043 4.043 11 C 0.521 3.479 12 O -0.559 6.559 13 O -0.494 6.494 14 C -0.103 4.103 15 C -0.125 4.125 16 C 0.059 3.941 17 N -0.701 5.701 18 C 0.087 3.913 19 H 0.259 0.741 20 H 0.015 0.985 21 H -0.012 1.012 22 H 0.406 0.594 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.092 0.908 29 H 0.356 0.644 30 H 0.082 0.918 31 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.531 -8.408 3.081 11.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.198 4.198 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.185 1.185 6 H -0.219 1.219 7 C -0.551 4.551 8 H 0.105 0.895 9 C 0.002 3.998 10 C -0.045 4.045 11 C 0.366 3.634 12 O -0.452 6.452 13 O -0.304 6.304 14 C -0.140 4.140 15 C -0.163 4.163 16 C -0.070 4.070 17 N -0.334 5.334 18 C -0.042 4.042 19 H 0.068 0.932 20 H 0.033 0.967 21 H 0.006 0.994 22 H 0.264 0.736 23 H 0.094 0.906 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.110 0.890 29 H 0.176 0.824 30 H 0.101 0.899 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.243 -8.545 2.560 11.490 hybrid contribution -0.171 1.105 0.116 1.124 sum 7.073 -7.439 2.676 10.608 Atomic orbital electron populations 1.70109 1.07770 1.27367 1.52783 1.25871 0.95491 1.02979 0.95430 0.85557 0.78867 0.79013 0.78285 1.19959 1.18528 1.21853 1.21781 0.94449 0.90509 1.48395 0.89465 1.19019 0.93037 0.91870 0.95864 1.20696 0.94587 0.97856 0.91312 1.23171 0.76333 0.77476 0.86396 1.90508 1.66563 1.39841 1.48301 1.84799 1.54810 1.42811 1.47956 1.21547 0.97778 0.92861 1.01860 1.21780 0.97571 0.97585 0.99349 1.21997 0.96898 0.91598 0.96529 1.60258 1.19357 1.01974 1.51836 1.21716 0.93782 0.94630 0.94072 0.93202 0.96705 0.99389 0.73571 0.90576 0.93076 0.89776 0.91427 0.94271 0.88955 0.82414 0.89936 0.94053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.85 13.29 21.45 0.28 -55.56 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.51 -27.26 7.34 25.60 0.19 -27.07 16 8 H 0.09 4.43 4.87 -2.91 -0.01 4.42 16 9 C 0.04 2.01 4.04 29.85 0.12 2.13 16 10 C -0.04 -1.76 0.51 -52.87 -0.03 -1.78 16 11 C 0.52 21.85 6.23 71.24 0.44 22.30 16 12 O -0.56 -24.47 14.56 21.98 0.32 -24.15 16 13 O -0.49 -19.15 10.51 -51.38 -0.54 -19.69 16 14 C -0.10 -3.71 4.43 30.67 0.14 -3.58 16 15 C -0.13 -3.79 5.77 30.65 0.18 -3.61 16 16 C 0.06 1.50 6.55 86.33 0.57 2.07 16 17 N -0.70 -20.29 6.45 -514.00 -3.32 -23.61 16 18 C 0.09 3.10 4.95 86.33 0.43 3.52 16 19 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 20 H 0.01 0.78 8.14 -2.38 -0.02 0.76 16 21 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 22 H 0.41 11.59 9.10 -74.06 -0.67 10.92 16 23 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.05 1.97 8.04 -2.39 -0.02 1.95 16 25 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.07 2.39 5.76 -2.39 -0.01 2.38 16 27 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.36 8.27 8.90 -89.70 -0.80 7.47 16 30 H 0.08 3.15 6.63 -2.39 -0.02 3.14 16 31 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -65.55 249.54 0.95 -64.61 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -0.32 Total: 18.60 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 2.49 Total: -5.61 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -3.03 Total: -79.18 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -0.22 Total: -43.84 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -65.55 0.95 -64.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691809751.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.291 kcal (2) G-P(sol) polarization free energy of solvation -65.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds