Wall clock time and date at job start Mon Mar 30 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 7 12 12 C 1.50707 * 110.27250 * 299.36868 * 11 10 9 13 13 O 1.20825 * 119.99851 * 239.30214 * 12 11 10 14 14 O 1.34227 * 120.00046 * 59.29397 * 12 11 10 15 15 C 1.54593 * 110.31073 * 177.17328 * 11 10 9 16 16 C 1.54936 * 102.91974 * 219.12703 * 15 11 10 17 17 N 1.48537 * 103.22872 * 37.41099 * 16 15 11 18 18 C 1.47900 * 105.81666 * 320.79619 * 17 16 15 19 19 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 21 21 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 22 22 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 23 23 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 24 24 H 0.96699 * 116.99578 * 179.97438 * 14 12 11 25 25 H 1.09002 * 110.72216 * 337.47988 * 15 11 10 26 26 H 1.09000 * 110.72415 * 100.76941 * 15 11 10 27 27 H 1.09007 * 110.66631 * 278.97510 * 16 15 11 28 28 H 1.08998 * 110.81298 * 155.91412 * 16 15 11 29 29 H 1.00900 * 110.99563 * 81.30943 * 17 16 15 30 30 H 1.09008 * 109.91585 * 265.97172 * 18 17 16 31 31 H 1.09005 * 109.91322 * 144.68660 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5514 -2.6368 -0.0009 12 6 6.0736 -1.9436 -1.2330 13 8 6.7840 -2.5407 -2.0067 14 8 5.7495 -0.6630 -1.4708 15 6 6.0879 -4.0849 0.0707 16 6 7.3067 -3.9563 1.0185 17 7 6.8526 -2.9609 2.0231 18 6 6.0858 -1.9466 1.2676 19 1 -0.4850 0.8401 0.0004 20 1 3.8745 -0.6801 -0.8911 21 1 3.8751 -0.6805 0.8889 22 1 3.6583 -3.1503 0.8892 23 1 3.6577 -3.1507 -0.8908 24 1 6.1087 -0.2611 -2.2736 25 1 5.3385 -4.7533 0.4947 26 1 6.4004 -4.4296 -0.9150 27 1 8.1777 -3.5866 0.4771 28 1 7.5286 -4.9108 1.4957 29 1 6.2783 -3.3962 2.7294 30 1 6.7376 -1.1173 0.9926 31 1 5.2540 -1.5841 1.8716 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691823747.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:50 Heat of formation + Delta-G solvation = -123.961122 kcal Electronic energy + Delta-G solvation = -14878.043694 eV Core-core repulsion = 12350.803654 eV Total energy + Delta-G solvation = -2527.240040 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.92926 -39.23325 -37.20959 -35.69223 -33.91659 -30.93693 -29.84285 -26.46569 -24.70441 -23.49650 -21.96645 -20.54643 -19.30346 -18.65175 -17.75892 -17.33696 -16.66177 -16.23352 -15.07777 -15.01644 -14.85983 -14.71984 -14.26708 -13.49267 -13.30677 -13.12729 -12.93261 -12.81481 -12.64746 -12.25555 -11.97200 -11.84791 -11.54833 -11.39774 -11.26165 -11.15345 -10.69401 -9.67208 -8.26317 -6.29179 1.15934 1.39730 1.41340 1.54865 2.11771 2.40062 3.10577 3.22567 3.41018 3.75929 3.93499 4.26878 4.31476 4.37521 4.56247 4.63458 4.72153 4.90751 4.91843 5.02696 5.07560 5.16939 5.47835 5.58176 5.61073 5.68283 5.74149 6.30283 6.42038 6.79109 7.00346 7.35010 8.90400 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038259 B = 0.009704 C = 0.009131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.676646 B = 2884.690298 C = 3065.698705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.003 3.997 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.239 1.239 7 C -0.529 4.529 8 H 0.029 0.971 9 C -0.018 4.018 10 C -0.080 4.080 11 C -0.084 4.084 12 C 0.500 3.500 13 O -0.545 6.545 14 O -0.502 6.502 15 C -0.142 4.142 16 C 0.047 3.953 17 N -0.672 5.672 18 C 0.059 3.941 19 H 0.264 0.736 20 H 0.042 0.958 21 H 0.027 0.973 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.419 0.581 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.351 0.649 30 H 0.075 0.925 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.005 -4.113 1.659 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.162 1.162 7 C -0.567 4.567 8 H 0.048 0.952 9 C -0.055 4.055 10 C -0.118 4.118 11 C -0.087 4.087 12 C 0.344 3.656 13 O -0.436 6.436 14 O -0.315 6.315 15 C -0.180 4.180 16 C -0.082 4.082 17 N -0.300 5.300 18 C -0.071 4.071 19 H 0.073 0.927 20 H 0.060 0.940 21 H 0.045 0.955 22 H 0.094 0.906 23 H 0.066 0.934 24 H 0.280 0.720 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.167 0.833 30 H 0.093 0.907 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.545 -3.954 1.896 16.152 hybrid contribution -1.086 0.548 -1.108 1.645 sum 14.459 -3.407 0.788 14.876 Atomic orbital electron populations 1.70083 1.08401 1.28015 1.53100 1.26002 0.95532 1.03551 0.94278 0.85665 0.79750 0.78125 0.79188 1.19385 1.21603 1.16226 1.21526 0.92362 0.92876 1.49961 0.95227 1.19799 0.93315 0.94137 0.98261 1.21410 0.89573 0.98905 1.01868 1.22007 0.97705 0.96794 0.92160 1.23377 0.75640 0.79995 0.86591 1.90624 1.37418 1.66777 1.48821 1.84753 1.70260 1.27218 1.49240 1.23214 0.99331 0.92612 1.02876 1.23145 0.96287 0.96528 0.92210 1.62733 1.39780 1.14327 1.13134 1.22774 0.97184 0.95688 0.91468 0.92690 0.93972 0.95522 0.90650 0.93415 0.71981 0.88785 0.89929 0.91054 0.87567 0.83260 0.90701 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 2 C 0.00 0.15 5.47 84.66 0.46 0.61 16 3 Si 0.95 43.88 27.47 68.60 1.88 45.76 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.24 -10.11 6.54 99.48 0.65 -9.45 16 7 C -0.53 -29.94 9.66 25.60 0.25 -29.69 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 9 C -0.02 -0.81 3.32 29.85 0.10 -0.71 16 10 C -0.08 -2.93 3.98 30.60 0.12 -2.81 16 11 C -0.08 -2.52 0.66 -52.05 -0.03 -2.56 16 12 C 0.50 16.07 6.68 71.24 0.48 16.54 16 13 O -0.55 -19.01 16.17 21.97 0.36 -18.65 16 14 O -0.50 -14.88 10.42 -51.39 -0.54 -15.42 16 15 C -0.14 -3.51 5.99 31.80 0.19 -3.32 16 16 C 0.05 1.00 7.55 86.65 0.65 1.66 16 17 N -0.67 -15.46 7.51 -502.19 -3.77 -19.23 16 18 C 0.06 1.64 6.33 86.44 0.55 2.19 16 19 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 20 H 0.04 1.87 4.83 -2.39 -0.01 1.85 16 21 H 0.03 1.15 5.60 -2.39 -0.01 1.14 16 22 H 0.07 2.66 8.13 -2.39 -0.02 2.64 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.42 8.31 9.10 -74.06 -0.67 7.64 16 25 H 0.09 2.09 7.86 -2.39 -0.02 2.07 16 26 H 0.08 2.22 6.83 -2.39 -0.02 2.20 16 27 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.35 6.87 8.92 -89.69 -0.80 6.07 16 30 H 0.07 2.13 7.67 -2.38 -0.02 2.11 16 31 H 0.08 2.49 6.38 -2.38 -0.02 2.47 16 Total: -1.00 -69.29 251.99 0.62 -68.67 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -0.37 Total: 16.56 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 2.76 Total: -18.09 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -3.47 Total: -78.83 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.18 Total: -34.07 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Total: -69.29 0.62 -68.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691823747.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.293 kcal (2) G-P(sol) polarization free energy of solvation -69.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds