Wall clock time and date at job start Mon Mar 30 2020 03:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47333 * 2 1 4 4 H 1.08996 * 109.99758 * 304.23690 * 3 2 1 5 5 C 1.54327 * 109.88052 * 65.32279 * 3 2 1 6 6 H 1.09008 * 110.87000 * 23.18149 * 5 3 2 7 7 C 1.50694 * 110.72349 * 259.97766 * 5 3 2 8 8 O 1.20830 * 120.00098 * 5.02282 * 7 5 3 9 9 O 1.34226 * 119.99980 * 185.02701 * 7 5 3 10 10 C 1.55161 * 102.93889 * 141.61067 * 5 3 2 11 11 C 1.54902 * 101.58469 * 324.49913 * 10 5 3 12 12 N 1.47018 * 109.88628 * 183.13378 * 3 2 1 13 13 C 1.36936 * 125.64574 * 61.60340 * 12 3 2 14 14 H 1.07990 * 120.00496 * 14.76001 * 13 12 3 15 15 C 1.38817 * 119.99811 * 194.75712 * 13 12 3 16 16 N 1.31625 * 120.00180 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99878 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47328 * 59.99696 * 17 15 13 19 19 H 1.48504 * 109.47229 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46954 * 299.99552 * 17 15 13 21 21 H 1.08997 * 109.46853 * 54.43390 * 1 2 3 22 22 H 1.09004 * 109.46793 * 174.43406 * 1 2 3 23 23 H 1.09002 * 109.46811 * 294.43244 * 1 2 3 24 24 H 1.08997 * 109.47561 * 240.00048 * 2 1 3 25 25 H 1.09003 * 109.47238 * 120.00191 * 2 1 3 26 26 H 0.96701 * 116.99807 * 179.97438 * 9 7 5 27 27 H 1.08999 * 111.00384 * 82.58072 * 10 5 3 28 28 H 1.09004 * 110.99973 * 206.38360 * 10 5 3 29 29 H 1.08996 * 110.37058 * 155.84611 * 11 10 5 30 30 H 1.08998 * 110.37065 * 278.17123 * 11 10 5 31 31 H 0.96997 * 120.00003 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6210 1.9860 -0.8468 5 6 1.6438 2.1393 1.3188 6 1 1.4687 1.4073 2.1073 7 6 0.4275 3.0064 1.1192 8 8 -0.1462 3.0068 0.0558 9 8 -0.0184 3.7782 2.1227 10 6 2.8893 3.0065 1.6415 11 6 4.0393 2.0981 1.1395 12 7 3.5083 1.4538 -0.0756 13 6 4.2583 0.9487 -1.1039 14 1 3.7908 0.7133 -2.0484 15 6 5.6198 0.7392 -0.9321 16 7 6.1897 1.0256 0.2193 17 14 6.6431 0.0508 -2.3351 18 1 6.5654 0.9675 -3.5008 19 1 8.0572 -0.0772 -1.9000 20 1 6.1204 -1.2849 -2.7200 21 1 -0.3633 0.5977 -0.8359 22 1 -0.3633 -1.0229 -0.0997 23 1 -0.3633 0.4251 0.9357 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 -0.8018 4.3173 1.9470 27 1 2.8645 3.9463 1.0899 28 1 2.9726 3.1870 2.7132 29 1 4.9178 2.6966 0.8984 30 1 4.2851 1.3473 1.8904 31 1 7.1411 0.8796 0.3391 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700693857.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:05 Heat of formation + Delta-G solvation = -78.533285 kcal Electronic energy + Delta-G solvation = -14953.375382 eV Core-core repulsion = 12428.105241 eV Total energy + Delta-G solvation = -2525.270141 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19977 -37.56572 -35.78090 -32.99032 -32.14006 -29.68599 -27.22986 -25.08842 -22.93207 -21.52723 -20.40051 -18.94608 -17.80567 -16.98472 -16.24556 -15.22845 -14.69468 -14.03422 -13.86968 -13.70072 -12.83884 -12.54095 -12.10382 -11.93560 -11.62295 -11.27493 -11.09164 -10.93611 -10.79936 -10.70634 -10.39571 -10.12772 -9.99247 -9.92615 -9.66713 -9.59306 -8.57914 -6.78206 -5.74732 -3.09875 2.52933 3.32085 3.41803 3.45876 3.47333 4.50431 5.08466 5.32595 5.37431 5.56148 5.59421 5.76079 5.84589 5.90384 6.09663 6.25521 6.37852 6.40732 6.55202 6.57750 6.69253 6.72790 6.98442 7.17895 7.47244 7.58458 7.78368 8.18006 8.27828 9.19907 9.80474 10.48502 11.38006 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042565 B = 0.009680 C = 0.008565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.652613 B = 2891.773327 C = 3268.381820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.174 3.826 4 H 0.054 0.946 5 C -0.092 4.092 6 H 0.109 0.891 7 C 0.489 3.511 8 O -0.513 6.513 9 O -0.519 6.519 10 C -0.134 4.134 11 C 0.172 3.828 12 N -0.597 5.597 13 C -0.225 4.225 14 H 0.075 0.925 15 C -0.005 4.005 16 N -0.920 5.920 17 Si 0.911 3.089 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.284 1.284 21 H 0.056 0.944 22 H 0.043 0.957 23 H 0.038 0.962 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.401 0.599 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 2.712 4.155 10.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C 0.067 3.933 4 H 0.072 0.928 5 C -0.111 4.111 6 H 0.127 0.873 7 C 0.331 3.669 8 O -0.400 6.400 9 O -0.331 6.331 10 C -0.173 4.173 11 C 0.047 3.953 12 N -0.322 5.322 13 C -0.353 4.353 14 H 0.093 0.907 15 C -0.201 4.201 16 N -0.566 5.566 17 Si 0.741 3.259 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.211 1.211 21 H 0.075 0.925 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.259 0.741 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.929 2.418 3.892 10.036 hybrid contribution -0.020 -0.088 -0.729 0.735 sum -8.950 2.331 3.163 9.774 Atomic orbital electron populations 1.21781 0.97150 1.00282 1.01098 1.22007 0.93663 0.98988 1.02360 1.20912 0.86535 0.93276 0.92592 0.92832 1.22131 0.90223 0.96762 1.02010 0.87317 1.23605 0.84872 0.77571 0.80844 1.90674 1.57523 1.64436 1.27396 1.84590 1.48332 1.55557 1.44576 1.23079 0.94831 0.98609 1.00764 1.21476 0.92927 0.92892 0.87965 1.44494 0.98532 1.68539 1.20612 1.18921 0.89982 1.35588 0.90821 0.90692 1.24898 0.97186 1.01027 0.97036 1.69901 1.10658 1.53177 1.22907 0.86213 0.79289 0.79088 0.81260 1.21123 1.21607 1.21085 0.92450 0.93807 0.94299 0.91488 0.92550 0.74113 0.91863 0.91028 0.90580 0.95146 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.74 37.16 0.32 -2.06 16 2 C -0.13 -2.54 5.41 -26.73 -0.14 -2.69 16 3 C 0.17 3.70 2.63 -66.95 -0.18 3.52 16 4 H 0.05 1.24 6.88 -51.93 -0.36 0.88 16 5 C -0.09 -1.64 2.33 -89.94 -0.21 -1.85 16 6 H 0.11 1.79 7.80 -51.92 -0.40 1.39 16 7 C 0.49 8.02 6.83 36.00 0.25 8.27 16 8 O -0.51 -9.57 15.05 -18.75 -0.28 -9.86 16 9 O -0.52 -6.65 13.41 -39.25 -0.53 -7.17 16 10 C -0.13 -2.49 6.51 -24.58 -0.16 -2.65 16 11 C 0.17 4.07 5.41 -2.53 -0.01 4.05 16 12 N -0.60 -15.08 3.13 -162.58 -0.51 -15.59 16 13 C -0.22 -6.21 9.74 -15.06 -0.15 -6.35 16 14 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 15 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 16 N -0.92 -26.52 10.58 55.49 0.59 -25.94 16 17 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H 0.06 0.98 7.72 -51.93 -0.40 0.58 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.04 0.60 7.08 -51.93 -0.37 0.23 16 24 H 0.07 1.40 7.90 -51.93 -0.41 0.99 16 25 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 26 H 0.40 3.22 9.10 45.56 0.41 3.64 16 27 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.99 6.94 -51.93 -0.36 1.63 16 30 H 0.03 0.76 8.06 -51.93 -0.42 0.35 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 256.12 15.07 3.86 3.86 Total: -1.00 -30.86 256.12 -5.80 -36.66 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -3.53 Total: 1.03 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -0.38 Total: 0.02 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.08 Total: -41.52 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.81 Total: -17.03 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.86 -5.80 -36.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700693857.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.873 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds