Wall clock time and date at job start Mon Mar 30 2020 03:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47333 * 2 1 4 4 H 1.08996 * 109.99758 * 304.23690 * 3 2 1 5 5 C 1.54327 * 109.88052 * 65.32279 * 3 2 1 6 6 H 1.09008 * 110.87000 * 23.18149 * 5 3 2 7 7 C 1.50694 * 110.72349 * 259.97766 * 5 3 2 8 8 O 1.20830 * 120.00098 * 5.02282 * 7 5 3 9 9 O 1.34226 * 119.99980 * 185.02701 * 7 5 3 10 10 C 1.55161 * 102.93889 * 141.61067 * 5 3 2 11 11 C 1.54902 * 101.58469 * 324.49913 * 10 5 3 12 12 N 1.47018 * 109.88628 * 183.13378 * 3 2 1 13 13 C 1.36936 * 125.64574 * 61.60340 * 12 3 2 14 14 H 1.07990 * 120.00496 * 14.76001 * 13 12 3 15 15 C 1.38817 * 119.99811 * 194.75712 * 13 12 3 16 16 N 1.31625 * 120.00180 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99878 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47328 * 59.99696 * 17 15 13 19 19 H 1.48504 * 109.47229 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46954 * 299.99552 * 17 15 13 21 21 H 1.08997 * 109.46853 * 54.43390 * 1 2 3 22 22 H 1.09004 * 109.46793 * 174.43406 * 1 2 3 23 23 H 1.09002 * 109.46811 * 294.43244 * 1 2 3 24 24 H 1.08997 * 109.47561 * 240.00048 * 2 1 3 25 25 H 1.09003 * 109.47238 * 120.00191 * 2 1 3 26 26 H 0.96701 * 116.99807 * 179.97438 * 9 7 5 27 27 H 1.08999 * 111.00384 * 82.58072 * 10 5 3 28 28 H 1.09004 * 110.99973 * 206.38360 * 10 5 3 29 29 H 1.08996 * 110.37058 * 155.84611 * 11 10 5 30 30 H 1.08998 * 110.37065 * 278.17123 * 11 10 5 31 31 H 0.96997 * 120.00003 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6210 1.9860 -0.8468 5 6 1.6438 2.1393 1.3188 6 1 1.4687 1.4073 2.1073 7 6 0.4275 3.0064 1.1192 8 8 -0.1462 3.0068 0.0558 9 8 -0.0184 3.7782 2.1227 10 6 2.8893 3.0065 1.6415 11 6 4.0393 2.0981 1.1395 12 7 3.5083 1.4538 -0.0756 13 6 4.2583 0.9487 -1.1039 14 1 3.7908 0.7133 -2.0484 15 6 5.6198 0.7392 -0.9321 16 7 6.1897 1.0256 0.2193 17 14 6.6431 0.0508 -2.3351 18 1 6.5654 0.9675 -3.5008 19 1 8.0572 -0.0772 -1.9000 20 1 6.1204 -1.2849 -2.7200 21 1 -0.3633 0.5977 -0.8359 22 1 -0.3633 -1.0229 -0.0997 23 1 -0.3633 0.4251 0.9357 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 -0.8018 4.3173 1.9470 27 1 2.8645 3.9463 1.0899 28 1 2.9726 3.1870 2.7132 29 1 4.9178 2.6966 0.8984 30 1 4.2851 1.3473 1.8904 31 1 7.1411 0.8796 0.3391 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700693857.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:05 Heat of formation + Delta-G solvation = -99.207544 kcal Electronic energy + Delta-G solvation = -14954.271885 eV Core-core repulsion = 12428.105241 eV Total energy + Delta-G solvation = -2526.166644 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.53969 -39.15782 -37.00821 -34.87460 -33.76232 -31.57617 -28.83551 -26.94788 -24.54876 -22.95692 -22.12776 -20.55362 -19.21136 -18.63692 -17.76945 -16.73454 -16.53936 -15.69338 -15.45196 -15.28578 -14.44101 -14.05488 -13.76103 -13.56725 -13.22478 -12.90155 -12.69792 -12.52676 -12.43962 -12.36074 -12.06242 -11.96583 -11.69843 -11.53034 -11.42157 -11.18912 -10.65951 -8.80909 -7.86341 -5.22921 1.24388 1.46728 1.49091 1.55424 2.11190 2.52036 3.33438 3.52547 3.74346 3.86367 4.12026 4.33715 4.40931 4.50964 4.62688 4.70604 4.77928 4.91353 5.05081 5.16138 5.24492 5.39045 5.46770 5.53922 5.62056 5.67609 5.74027 6.24819 7.07400 7.11236 7.77240 8.44050 9.24848 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042565 B = 0.009680 C = 0.008565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.652613 B = 2891.773327 C = 3268.381820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 C 0.168 3.832 4 H 0.034 0.966 5 C -0.086 4.086 6 H 0.129 0.871 7 C 0.501 3.499 8 O -0.538 6.538 9 O -0.504 6.504 10 C -0.117 4.117 11 C 0.175 3.825 12 N -0.618 5.618 13 C -0.238 4.238 14 H 0.072 0.928 15 C -0.058 4.058 16 N -0.945 5.945 17 Si 0.974 3.026 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.278 1.278 21 H 0.047 0.953 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.427 0.573 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.041 0.959 30 H 0.010 0.990 31 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.889 2.931 4.839 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.062 3.938 4 H 0.052 0.948 5 C -0.105 4.105 6 H 0.147 0.853 7 C 0.345 3.655 8 O -0.428 6.428 9 O -0.318 6.318 10 C -0.155 4.155 11 C 0.050 3.950 12 N -0.343 5.343 13 C -0.367 4.367 14 H 0.089 0.911 15 C -0.251 4.251 16 N -0.593 5.593 17 Si 0.802 3.198 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.204 1.204 21 H 0.066 0.934 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.288 0.712 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.059 0.941 30 H 0.028 0.972 31 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.483 2.660 4.590 11.749 hybrid contribution 0.395 -0.105 -0.921 1.007 sum -10.088 2.556 3.669 11.034 Atomic orbital electron populations 1.21659 0.94319 1.01634 1.01446 1.21885 0.96012 0.97335 1.01129 1.20976 0.84259 0.94578 0.94000 0.94822 1.21976 0.90898 0.97250 1.00400 0.85297 1.23028 0.84154 0.77504 0.80860 1.90687 1.58267 1.65312 1.28516 1.84502 1.49547 1.55024 1.42704 1.22901 0.92734 0.97334 1.02581 1.21281 0.93856 0.92681 0.87133 1.44757 1.00401 1.68671 1.20465 1.19188 0.90652 1.35195 0.91626 0.91061 1.25645 0.98232 1.01838 0.99422 1.70090 1.10425 1.54228 1.24527 0.85235 0.77449 0.78534 0.78602 1.20605 1.21745 1.20423 0.93369 0.91689 0.92870 0.93761 0.92751 0.71153 0.91843 0.87652 0.94052 0.97195 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 8.74 71.98 0.63 -3.45 16 2 C -0.12 -4.76 5.41 30.60 0.17 -4.60 16 3 C 0.17 7.10 2.63 45.34 0.12 7.22 16 4 H 0.03 1.57 6.88 -2.39 -0.02 1.55 16 5 C -0.09 -2.89 2.33 -10.35 -0.02 -2.91 16 6 H 0.13 3.84 7.80 -2.38 -0.02 3.82 16 7 C 0.50 14.96 6.83 71.23 0.49 15.44 16 8 O -0.54 -18.91 15.05 21.95 0.33 -18.58 16 9 O -0.50 -10.75 13.41 -51.37 -0.69 -11.44 16 10 C -0.12 -4.14 6.51 31.99 0.21 -3.93 16 11 C 0.18 8.40 5.41 86.85 0.47 8.87 16 12 N -0.62 -31.75 3.13 -668.28 -2.09 -33.84 16 13 C -0.24 -13.41 9.74 84.03 0.82 -12.59 16 14 H 0.07 3.96 7.83 -2.92 -0.02 3.93 16 15 C -0.06 -3.27 5.47 84.86 0.46 -2.81 16 16 N -0.94 -55.89 10.58 21.65 0.23 -55.66 16 17 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 19 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H 0.05 1.57 7.72 -2.39 -0.02 1.55 16 22 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.05 1.48 7.08 -2.39 -0.02 1.46 16 24 H 0.04 1.86 7.90 -2.39 -0.02 1.84 16 25 H 0.05 2.08 8.07 -2.39 -0.02 2.06 16 26 H 0.43 4.93 9.10 -74.06 -0.67 4.25 16 27 H 0.06 2.24 8.04 -2.39 -0.02 2.23 16 28 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 29 H 0.04 2.24 6.94 -2.39 -0.02 2.22 16 30 H 0.01 0.51 8.06 -2.39 -0.02 0.49 16 31 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -67.39 256.12 3.60 -63.79 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 0.45 Total: 6.54 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 3.34 Total: 1.25 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -1.86 Total: -89.50 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.36 Total: -30.02 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -67.39 3.60 -63.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700693857.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.413 kcal (2) G-P(sol) polarization free energy of solvation -67.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds