Wall clock time and date at job start Mon Mar 30 2020 02:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47479 * 110.99807 * 74.03005 * 10 9 7 12 12 C 1.53513 * 87.93098 * 138.70399 * 11 10 9 13 13 C 1.53001 * 114.16836 * 220.32563 * 12 11 10 14 14 C 1.52998 * 109.47401 * 268.83947 * 13 12 11 15 15 C 1.50699 * 109.47164 * 180.02562 * 14 13 12 16 16 O 1.20826 * 120.00259 * 359.97438 * 15 14 13 17 17 O 1.34235 * 119.99949 * 180.02562 * 15 14 13 18 18 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 1.09005 * 113.47355 * 253.46796 * 11 10 9 23 23 H 1.09001 * 113.48166 * 23.93656 * 11 10 9 24 24 H 1.09004 * 114.34366 * 87.63509 * 12 11 10 25 25 H 1.08999 * 109.47359 * 28.84044 * 13 12 11 26 26 H 1.09000 * 109.47103 * 148.84131 * 13 12 11 27 27 H 1.08999 * 109.46943 * 300.00352 * 14 13 12 28 28 H 1.09000 * 109.46843 * 60.00024 * 14 13 12 29 29 H 0.96694 * 117.00134 * 179.97438 * 17 15 14 30 30 H 1.08998 * 113.47981 * 336.06662 * 18 10 9 31 31 H 1.09002 * 113.47449 * 106.53233 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.8370 -3.7713 1.3232 12 6 2.6863 -5.2897 1.1549 13 6 2.2639 -6.0224 2.4299 14 6 3.5096 -6.4692 3.1978 15 6 3.0935 -7.1914 4.4534 16 8 1.9210 -7.3337 4.7082 17 8 4.0255 -7.6757 5.2892 18 6 1.5184 -4.8986 0.2386 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 3.8746 -3.4384 1.3512 23 1 2.2406 -3.3635 2.1394 24 1 3.5177 -5.7693 0.6383 25 1 1.6726 -5.3530 3.0548 26 1 1.6670 -6.8955 2.1665 27 1 4.1009 -7.1386 2.5730 28 1 4.1065 -5.5961 3.4613 29 1 3.7104 -8.1311 6.0819 30 1 0.5701 -4.7916 0.7653 31 1 1.4384 -5.5211 -0.6526 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709366797.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:31 Heat of formation + Delta-G solvation = -97.638014 kcal Electronic energy + Delta-G solvation = -13858.029842 eV Core-core repulsion = 11331.931258 eV Total energy + Delta-G solvation = -2526.098584 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.34367 -40.74084 -37.12338 -35.41041 -34.28907 -31.02437 -27.90911 -26.75421 -25.45504 -22.89202 -21.52800 -20.56621 -18.98899 -18.55879 -17.42661 -17.14066 -16.70707 -16.48276 -15.67337 -15.42575 -14.70520 -14.29713 -14.03679 -13.67964 -13.40314 -13.04047 -12.84790 -12.52610 -12.51931 -12.35691 -12.25173 -11.95238 -11.62848 -11.39320 -11.18614 -11.03513 -10.65827 -9.58489 -8.25201 -6.36551 1.27455 1.39033 1.41101 1.53035 2.21309 2.38274 3.07707 3.41280 3.47625 3.83864 4.08566 4.28492 4.45910 4.55048 4.63775 4.70701 4.78408 4.84984 4.85535 4.96773 5.04491 5.11181 5.18356 5.48054 5.54763 5.68886 5.77492 6.13319 6.44668 6.79283 7.05128 7.33857 8.86833 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047142 B = 0.005540 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.803912 B = 5053.256718 C = 5252.395877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.263 1.263 6 H -0.280 1.280 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.174 3.826 10 N -0.491 5.491 11 C 0.012 3.988 12 C -0.086 4.086 13 C -0.092 4.092 14 C -0.107 4.107 15 C 0.483 3.517 16 O -0.560 6.560 17 O -0.514 6.514 18 C -0.009 4.009 19 H 0.266 0.734 20 H -0.029 1.029 21 H -0.002 1.002 22 H 0.081 0.919 23 H 0.045 0.955 24 H 0.129 0.871 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.138 0.862 28 H 0.121 0.879 29 H 0.425 0.575 30 H 0.047 0.953 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.298 -14.055 7.848 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.188 1.188 6 H -0.206 1.206 7 C -0.568 4.568 8 H 0.080 0.920 9 C 0.047 3.953 10 N -0.213 5.213 11 C -0.117 4.117 12 C -0.104 4.104 13 C -0.130 4.130 14 C -0.144 4.144 15 C 0.327 3.673 16 O -0.452 6.452 17 O -0.327 6.327 18 C -0.138 4.138 19 H 0.074 0.926 20 H -0.011 1.011 21 H 0.016 0.984 22 H 0.100 0.900 23 H 0.063 0.937 24 H 0.146 0.854 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.156 0.844 28 H 0.139 0.861 29 H 0.286 0.714 30 H 0.066 0.934 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.365 -13.641 6.945 17.945 hybrid contribution -1.171 0.804 1.169 1.839 sum 8.194 -12.837 8.114 17.256 Atomic orbital electron populations 1.70096 1.07889 1.28062 1.51528 1.25994 0.95792 1.03503 0.94505 0.85318 0.78536 0.77823 0.78566 1.19575 1.18756 1.20590 1.21418 0.93575 0.91189 1.50579 0.92013 1.19883 0.91129 0.90712 0.93608 1.68833 1.21874 1.02034 1.28595 1.23697 1.00651 0.95987 0.91332 1.22718 0.98513 0.93816 0.95391 1.21296 0.96676 1.00371 0.94697 1.21426 1.00095 1.02106 0.90780 1.23952 0.83076 0.75027 0.85214 1.90731 1.21664 1.57108 1.75651 1.84515 1.41965 1.69110 1.37109 1.23870 0.96680 0.93374 0.99868 0.92573 1.01090 0.98392 0.90011 0.93709 0.85357 0.93250 0.90537 0.84435 0.86100 0.71356 0.93436 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.53 -31.02 8.95 25.60 0.23 -30.79 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.17 9.68 4.59 85.55 0.39 10.08 16 10 N -0.49 -21.85 6.40 -932.46 -5.97 -27.82 16 11 C 0.01 0.46 6.87 83.57 0.57 1.03 16 12 C -0.09 -2.31 3.99 -10.45 -0.04 -2.35 16 13 C -0.09 -2.16 4.41 30.59 0.14 -2.02 16 14 C -0.11 -1.78 5.80 29.85 0.17 -1.61 16 15 C 0.48 9.65 8.33 71.24 0.59 10.24 16 16 O -0.56 -15.85 16.74 21.96 0.37 -15.49 16 17 O -0.51 -7.27 13.42 -51.47 -0.69 -7.96 16 18 C -0.01 -0.31 7.29 83.57 0.61 0.30 16 19 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 20 H -0.03 -1.71 7.56 -2.38 -0.02 -1.72 16 21 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 22 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 23 H 0.04 1.81 7.43 -2.39 -0.02 1.79 16 24 H 0.13 2.75 8.12 -2.39 -0.02 2.73 16 25 H 0.05 1.41 7.77 -2.39 -0.02 1.39 16 26 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 27 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.43 2.69 9.10 -74.06 -0.67 2.02 16 30 H 0.05 1.80 7.73 -2.39 -0.02 1.78 16 31 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -73.67 269.04 -0.41 -74.09 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 0.44 Total: 2.37 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 3.13 Total: -14.66 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -5.69 Total: -85.25 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.32 Total: -23.45 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.67 -0.41 -74.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709366797.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.553 kcal (2) G-P(sol) polarization free energy of solvation -73.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds