Wall clock time and date at job start Mon Mar 30 2020 02:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 120.00079 * 2 1 4 4 H 1.48493 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46756 * 300.00114 * 3 2 1 6 6 H 1.48497 * 109.46810 * 59.99918 * 3 2 1 7 7 C 1.37880 * 120.00524 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00557 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99799 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47362 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.52072 * 300.00248 * 10 9 7 12 12 O 1.20830 * 119.99594 * 239.99931 * 11 10 9 13 13 O 1.34222 * 120.00024 * 59.72214 * 11 10 9 14 14 C 1.53119 * 109.52154 * 60.12284 * 10 9 7 15 15 C 1.53180 * 109.20695 * 177.56219 * 14 10 9 16 16 N 1.46848 * 109.55801 * 300.86588 * 15 14 10 17 17 C 1.46845 * 111.19958 * 61.73960 * 16 15 14 18 18 C 1.53045 * 109.52347 * 298.25907 * 17 16 15 19 19 H 0.96998 * 120.00429 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46695 * 59.99848 * 9 7 2 21 21 H 1.09002 * 109.46650 * 300.00406 * 9 7 2 22 22 H 0.96704 * 116.99844 * 179.97438 * 13 11 10 23 23 H 1.08996 * 109.50971 * 297.56301 * 14 10 9 24 24 H 1.08997 * 109.50292 * 57.68745 * 14 10 9 25 25 H 1.09000 * 109.44499 * 180.83788 * 15 14 10 26 26 H 1.08999 * 109.43698 * 60.88318 * 15 14 10 27 27 H 1.00900 * 111.00112 * 185.83986 * 16 15 14 28 28 H 1.08995 * 109.46491 * 178.24597 * 17 16 15 29 29 H 1.08996 * 109.45494 * 58.26683 * 17 16 15 30 30 H 1.08994 * 109.50429 * 299.23582 * 18 17 16 31 31 H 1.08993 * 109.53437 * 179.14026 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 3.1124 -3.5832 -1.2306 12 8 3.1175 -4.4933 -2.0255 13 8 3.8748 -2.4997 -1.4461 14 6 3.1243 -3.5838 1.2508 15 6 4.0753 -4.7843 1.2746 16 7 3.2959 -6.0289 1.2774 17 6 2.4796 -6.1470 0.0625 18 6 1.4810 -4.9888 0.0026 19 1 -0.4851 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 4.4143 -2.4951 -2.2486 23 1 3.7024 -2.6600 1.2324 24 1 2.4940 -3.6016 2.1399 25 1 4.6928 -4.7404 2.1717 26 1 4.7145 -4.7582 0.3921 27 1 3.8969 -6.8317 1.3887 28 1 1.9380 -7.0928 0.0793 29 1 3.1265 -6.1144 -0.8141 30 1 0.8249 -5.0287 0.8720 31 1 0.8853 -5.0678 -0.9067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709517148.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:01 Heat of formation + Delta-G solvation = -103.282718 kcal Electronic energy + Delta-G solvation = -15223.998226 eV Core-core repulsion = 12697.654869 eV Total energy + Delta-G solvation = -2526.343357 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28083 -37.42221 -35.35109 -33.90451 -31.89946 -30.35144 -27.45656 -24.40027 -23.00587 -22.31698 -20.72417 -18.87352 -17.21135 -16.47723 -16.11704 -15.14763 -14.80603 -14.25129 -14.12100 -13.52340 -13.07843 -12.76890 -12.39475 -11.99454 -11.66745 -11.38596 -11.25076 -10.96061 -10.74613 -10.73112 -10.54687 -10.19560 -9.93006 -9.47577 -9.25352 -8.94418 -8.36900 -8.09488 -5.99731 -3.99947 3.00280 3.31929 3.40008 3.44538 3.89910 4.47218 4.53933 5.27449 5.29873 5.35060 5.53489 5.68971 5.80367 5.92018 6.00958 6.18597 6.21983 6.40846 6.56361 6.61635 6.76679 6.91594 7.24463 7.32874 7.55268 7.56738 7.63803 8.01156 8.34364 8.71746 9.08926 9.63690 11.11993 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041425 B = 0.010352 C = 0.010088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.763493 B = 2704.078527 C = 2775.026835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.511 4.511 8 H 0.078 0.922 9 C 0.033 3.967 10 C -0.046 4.046 11 C 0.505 3.495 12 O -0.548 6.548 13 O -0.485 6.485 14 C -0.094 4.094 15 C 0.051 3.949 16 N -0.690 5.690 17 C 0.045 3.955 18 C -0.096 4.096 19 H 0.259 0.741 20 H 0.019 0.981 21 H 0.035 0.965 22 H 0.384 0.616 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.019 0.981 27 H 0.334 0.666 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.875 -7.951 0.982 10.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.549 4.549 8 H 0.096 0.904 9 C -0.004 4.004 10 C -0.047 4.047 11 C 0.350 3.650 12 O -0.440 6.440 13 O -0.292 6.292 14 C -0.132 4.132 15 C -0.078 4.078 16 N -0.320 5.320 17 C -0.084 4.084 18 C -0.134 4.134 19 H 0.069 0.931 20 H 0.038 0.962 21 H 0.053 0.947 22 H 0.240 0.760 23 H 0.106 0.894 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.037 0.963 27 H 0.150 0.850 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.972 -7.793 1.510 9.933 hybrid contribution 1.354 0.775 -1.321 2.045 sum 7.326 -7.018 0.189 10.147 Atomic orbital electron populations 1.69974 1.06086 1.26478 1.51273 1.25003 0.94735 0.99238 0.95530 0.86541 0.80272 0.83853 0.77360 1.19570 1.21320 1.21237 1.21461 0.93879 0.89955 1.49630 0.90389 1.19223 0.92694 0.90080 0.98403 1.20816 0.95456 0.98785 0.89687 1.23679 0.76508 0.77585 0.87227 1.90547 1.65771 1.39552 1.48158 1.84940 1.54784 1.43062 1.46423 1.21630 0.97523 0.96988 0.97043 1.22106 0.95124 0.90916 0.99647 1.60339 1.27680 1.04203 1.39819 1.22168 0.96388 0.98607 0.91216 1.21530 0.97303 0.92047 1.02476 0.93137 0.96223 0.94673 0.75973 0.89438 0.90189 0.90952 0.96250 0.84980 0.91547 0.93015 0.90359 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -13.55 7.36 -34.44 -0.25 -13.81 16 8 H 0.08 2.01 4.88 -52.49 -0.26 1.75 16 9 C 0.03 0.82 4.04 -27.88 -0.11 0.70 16 10 C -0.05 -0.94 0.51 -155.54 -0.08 -1.02 16 11 C 0.50 10.36 5.49 36.01 0.20 10.56 16 12 O -0.55 -11.66 14.57 -18.75 -0.27 -11.93 16 13 O -0.48 -9.28 10.49 -39.24 -0.41 -9.69 16 14 C -0.09 -1.73 4.55 -26.58 -0.12 -1.85 16 15 C 0.05 0.80 6.35 -3.76 -0.02 0.78 16 16 N -0.69 -10.26 6.85 -113.74 -0.78 -11.04 16 17 C 0.04 0.73 6.27 -3.83 -0.02 0.70 16 18 C -0.10 -1.76 4.52 -26.65 -0.12 -1.88 16 19 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 20 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.38 5.41 9.10 45.56 0.41 5.82 16 23 H 0.09 1.69 6.65 -51.93 -0.35 1.35 16 24 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.02 0.31 7.31 -51.93 -0.38 -0.07 16 27 H 0.33 4.11 8.90 -39.29 -0.35 3.76 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.92 5.73 -51.93 -0.30 0.62 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 LS Contribution 248.35 15.07 3.74 3.74 Total: -1.00 -30.78 248.35 -5.94 -36.72 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -3.30 Total: 5.92 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.63 Total: -4.38 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.04 Total: -36.65 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.68 Total: -21.62 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.78 -5.94 -36.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709517148.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.564 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds