Wall clock time and date at job start Mon Mar 30 2020 02:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 120.00079 * 2 1 4 4 H 1.48493 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46756 * 300.00114 * 3 2 1 6 6 H 1.48497 * 109.46810 * 59.99918 * 3 2 1 7 7 C 1.37880 * 120.00524 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00557 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99799 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47362 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.52072 * 300.00248 * 10 9 7 12 12 O 1.20830 * 119.99594 * 239.99931 * 11 10 9 13 13 O 1.34222 * 120.00024 * 59.72214 * 11 10 9 14 14 C 1.53119 * 109.52154 * 60.12284 * 10 9 7 15 15 C 1.53180 * 109.20695 * 177.56219 * 14 10 9 16 16 N 1.46848 * 109.55801 * 300.86588 * 15 14 10 17 17 C 1.46845 * 111.19958 * 61.73960 * 16 15 14 18 18 C 1.53045 * 109.52347 * 298.25907 * 17 16 15 19 19 H 0.96998 * 120.00429 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46695 * 59.99848 * 9 7 2 21 21 H 1.09002 * 109.46650 * 300.00406 * 9 7 2 22 22 H 0.96704 * 116.99844 * 179.97438 * 13 11 10 23 23 H 1.08996 * 109.50971 * 297.56301 * 14 10 9 24 24 H 1.08997 * 109.50292 * 57.68745 * 14 10 9 25 25 H 1.09000 * 109.44499 * 180.83788 * 15 14 10 26 26 H 1.08999 * 109.43698 * 60.88318 * 15 14 10 27 27 H 1.00900 * 111.00112 * 185.83986 * 16 15 14 28 28 H 1.08995 * 109.46491 * 178.24597 * 17 16 15 29 29 H 1.08996 * 109.45494 * 58.26683 * 17 16 15 30 30 H 1.08994 * 109.50429 * 299.23582 * 18 17 16 31 31 H 1.08993 * 109.53437 * 179.14026 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 3.1124 -3.5832 -1.2306 12 8 3.1175 -4.4933 -2.0255 13 8 3.8748 -2.4997 -1.4461 14 6 3.1243 -3.5838 1.2508 15 6 4.0753 -4.7843 1.2746 16 7 3.2959 -6.0289 1.2774 17 6 2.4796 -6.1470 0.0625 18 6 1.4810 -4.9888 0.0026 19 1 -0.4851 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 4.4143 -2.4951 -2.2486 23 1 3.7024 -2.6600 1.2324 24 1 2.4940 -3.6016 2.1399 25 1 4.6928 -4.7404 2.1717 26 1 4.7145 -4.7582 0.3921 27 1 3.8969 -6.8317 1.3887 28 1 1.9380 -7.0928 0.0793 29 1 3.1265 -6.1144 -0.8141 30 1 0.8249 -5.0287 0.8720 31 1 0.8853 -5.0678 -0.9067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709517148.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:01 Heat of formation + Delta-G solvation = -126.181824 kcal Electronic energy + Delta-G solvation = -15224.991206 eV Core-core repulsion = 12697.654869 eV Total energy + Delta-G solvation = -2527.336337 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.85748 -38.87863 -36.96019 -35.65124 -33.76137 -31.72378 -29.29678 -26.11875 -24.70242 -23.82009 -22.25925 -20.40927 -18.88740 -18.27310 -17.64622 -16.69120 -16.62265 -15.99637 -15.47511 -14.86655 -14.71927 -14.43111 -14.10562 -13.65148 -13.27827 -13.08701 -12.88074 -12.64909 -12.58856 -12.41977 -12.01798 -11.93012 -11.52414 -11.12059 -11.02743 -10.81813 -10.50142 -9.33051 -8.11831 -6.17931 1.36614 1.43742 1.45621 1.58175 2.39291 2.47884 3.22828 3.35160 3.80078 3.90687 4.07525 4.31217 4.46445 4.51223 4.63755 4.72952 4.92234 4.92984 5.00941 5.15887 5.24591 5.38937 5.44562 5.56629 5.77688 5.89666 6.05355 6.27099 6.57564 6.97663 7.22593 7.49693 9.00871 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041425 B = 0.010352 C = 0.010088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.763493 B = 2704.078527 C = 2775.026835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.003 4.003 3 Si 0.957 3.043 4 H -0.256 1.256 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.088 0.912 9 C 0.041 3.959 10 C -0.047 4.047 11 C 0.505 3.495 12 O -0.557 6.557 13 O -0.492 6.492 14 C -0.091 4.091 15 C 0.059 3.941 16 N -0.687 5.687 17 C 0.054 3.946 18 C -0.097 4.097 19 H 0.259 0.741 20 H -0.015 1.015 21 H 0.014 0.986 22 H 0.408 0.592 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.016 0.984 27 H 0.354 0.646 28 H 0.090 0.910 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.709 -8.461 1.442 12.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.199 4.199 3 Si 0.783 3.217 4 H -0.180 1.180 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.106 0.894 9 C 0.004 3.996 10 C -0.048 4.048 11 C 0.351 3.649 12 O -0.450 6.450 13 O -0.302 6.302 14 C -0.128 4.128 15 C -0.071 4.071 16 N -0.320 5.320 17 C -0.075 4.075 18 C -0.134 4.134 19 H 0.068 0.932 20 H 0.003 0.997 21 H 0.032 0.968 22 H 0.267 0.733 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.118 0.882 26 H 0.034 0.966 27 H 0.173 0.827 28 H 0.108 0.892 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.844 -8.319 1.964 11.602 hybrid contribution 0.772 0.915 -1.489 1.911 sum 8.616 -7.404 0.475 11.370 Atomic orbital electron populations 1.70112 1.07796 1.27285 1.52917 1.25883 0.95505 1.03020 0.95533 0.85500 0.79629 0.79428 0.77105 1.18007 1.21443 1.20995 1.21812 0.94439 0.90513 1.48125 0.89435 1.19021 0.93039 0.91915 0.95672 1.20742 0.95068 0.97908 0.91132 1.23577 0.76619 0.77737 0.86997 1.90544 1.66196 1.39940 1.48273 1.84840 1.54945 1.42404 1.48009 1.21564 0.97508 0.98209 0.95561 1.22029 0.94366 0.89840 1.00834 1.60274 1.28081 1.04813 1.38826 1.22043 0.95864 0.98406 0.91213 1.21526 0.97782 0.92148 1.01988 0.93223 0.99662 0.96809 0.73309 0.90517 0.90673 0.88190 0.96624 0.82716 0.89177 0.94423 0.90220 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.25 13.29 21.45 0.28 -55.96 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 3 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.51 -27.17 7.36 25.60 0.19 -26.98 16 8 H 0.09 4.42 4.88 -2.91 -0.01 4.41 16 9 C 0.04 2.06 4.04 29.85 0.12 2.18 16 10 C -0.05 -1.92 0.51 -52.85 -0.03 -1.94 16 11 C 0.51 20.31 5.49 71.24 0.39 20.70 16 12 O -0.56 -23.11 14.57 21.95 0.32 -22.79 16 13 O -0.49 -18.10 10.49 -51.34 -0.54 -18.64 16 14 C -0.09 -3.22 4.55 30.69 0.14 -3.08 16 15 C 0.06 1.66 6.35 86.37 0.55 2.21 16 16 N -0.69 -18.39 6.85 -513.75 -3.52 -21.91 16 17 C 0.05 1.62 6.27 86.33 0.54 2.16 16 18 C -0.10 -3.50 4.52 30.65 0.14 -3.36 16 19 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 20 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 21 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.41 10.65 9.10 -74.05 -0.67 9.98 16 23 H 0.08 2.87 6.65 -2.39 -0.02 2.85 16 24 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 25 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.02 0.46 7.31 -2.39 -0.02 0.45 16 27 H 0.35 7.39 8.90 -89.69 -0.80 6.59 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.04 1.27 5.73 -2.39 -0.01 1.25 16 30 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.06 2.15 8.04 -2.39 -0.02 2.13 16 Total: -1.00 -65.38 248.35 0.76 -64.63 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -0.32 Total: 16.94 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 2.50 Total: -7.80 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -3.23 Total: -77.87 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.22 Total: -41.42 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -65.38 0.76 -64.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709517148.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.556 kcal (2) G-P(sol) polarization free energy of solvation -65.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds