Wall clock time and date at job start Mon Mar 30 2020 02:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99972 * 2 1 4 4 H 1.48505 * 109.46812 * 269.99860 * 3 2 1 5 5 H 1.48496 * 109.47309 * 29.99581 * 3 2 1 6 6 H 1.48492 * 109.47263 * 150.00046 * 3 2 1 7 7 C 1.37875 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00123 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00163 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47043 * 179.97438 * 9 7 2 11 11 C 1.49228 * 110.99823 * 69.73482 * 10 9 7 12 12 C 1.51377 * 105.27132 * 116.32706 * 11 10 9 13 13 H 1.08997 * 110.54707 * 275.65557 * 12 11 10 14 14 C 1.52756 * 120.77587 * 144.84865 * 12 11 10 15 15 S 1.84964 * 99.68704 * 198.70503 * 14 12 11 16 16 C 1.84645 * 96.83867 * 25.81821 * 15 14 12 17 17 C 1.51452 * 102.41172 * 6.68759 * 16 15 14 18 18 H 1.08999 * 109.62250 * 80.75079 * 17 16 15 19 19 C 1.49720 * 110.99856 * 189.99418 * 10 9 7 20 20 H 0.97002 * 120.00077 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47521 * 59.99664 * 9 7 2 22 22 H 1.08999 * 109.46575 * 299.99601 * 9 7 2 23 23 H 1.08992 * 110.28403 * 357.37613 * 11 10 9 24 24 H 1.08996 * 110.28034 * 235.27180 * 11 10 9 25 25 H 1.09007 * 111.36458 * 316.32449 * 14 12 11 26 26 H 1.09006 * 111.36255 * 81.09104 * 14 12 11 27 27 H 1.08995 * 110.82037 * 248.45399 * 16 15 14 28 28 H 1.09000 * 110.98378 * 124.99161 * 16 15 14 29 29 H 1.09000 * 110.77524 * 95.21842 * 19 10 9 30 30 H 1.09003 * 110.78007 * 331.78767 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0022 11 6 3.7251 -3.2449 -1.3044 12 6 5.0863 -3.5569 -1.8885 13 1 5.4830 -2.6908 -2.4180 14 6 5.3133 -4.8267 -2.7068 15 16 7.1573 -4.9337 -2.6103 16 6 7.3483 -4.0099 -1.0229 17 6 5.9120 -3.8211 -0.5813 18 1 5.5531 -4.7327 -0.1035 19 6 5.4778 -2.6258 0.2454 20 1 -0.4850 0.8401 -0.0004 21 1 3.8746 -0.6799 0.8911 22 1 3.8752 -0.6804 -0.8889 23 1 3.1765 -2.5717 -1.9630 24 1 3.1612 -4.1645 -1.1480 25 1 4.8404 -5.6904 -2.2391 26 1 4.9762 -4.7015 -3.7358 27 1 7.8318 -3.0476 -1.1905 28 1 7.9038 -4.5988 -0.2930 29 1 5.6907 -2.7884 1.3020 30 1 5.9576 -1.7142 -0.1110 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712380361.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:12 Heat of formation + Delta-G solvation = 12.373640 kcal Electronic energy + Delta-G solvation = -12491.452878 eV Core-core repulsion = 10412.877628 eV Total energy + Delta-G solvation = -2078.575250 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.42416 -34.21970 -32.22295 -30.75417 -28.38182 -26.30303 -24.65387 -21.47858 -20.31362 -19.75077 -16.81326 -16.20403 -16.01507 -14.99765 -14.43774 -14.26573 -13.72036 -12.91216 -12.78259 -12.42828 -12.37137 -12.16816 -11.85760 -11.21829 -11.17988 -10.84258 -10.79396 -10.54376 -10.27328 -9.84912 -9.65740 -9.34101 -8.62959 -7.81530 -7.51726 -6.09470 -4.07364 1.76026 2.22144 3.24232 3.32583 3.33789 4.37283 4.41058 4.42677 4.64767 5.03215 5.16751 5.21281 5.23849 5.37509 5.44696 5.56695 5.65305 5.76241 5.92377 6.08012 6.21606 6.41072 6.50461 6.67690 6.81573 7.47847 7.77493 7.80440 8.58826 8.99855 9.51919 11.03686 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.058773 B = 0.007491 C = 0.007188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.290949 B = 3736.686423 C = 3894.189160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.510 4.510 8 H 0.081 0.919 9 C 0.155 3.845 10 N -0.513 5.513 11 C 0.069 3.931 12 C -0.132 4.132 13 H 0.085 0.915 14 C -0.040 4.040 15 S -0.326 6.326 16 C -0.043 4.043 17 C -0.121 4.121 18 H 0.090 0.910 19 C 0.055 3.945 20 H 0.264 0.736 21 H 0.029 0.971 22 H -0.014 1.014 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.625 -6.692 -3.116 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.099 0.901 9 C 0.029 3.971 10 N -0.236 5.236 11 C -0.060 4.060 12 C -0.153 4.153 13 H 0.103 0.897 14 C -0.188 4.188 15 S -0.098 6.098 16 C -0.191 4.191 17 C -0.141 4.141 18 H 0.108 0.892 19 C -0.074 4.074 20 H 0.074 0.926 21 H 0.047 0.953 22 H 0.003 0.997 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.033 -7.351 -3.455 15.357 hybrid contribution 0.019 1.921 0.058 1.922 sum 13.052 -5.431 -3.397 14.539 Atomic orbital electron populations 1.69889 1.06116 1.26884 1.50880 1.24902 0.94740 0.98831 0.94818 0.86874 0.80366 0.84098 0.78486 1.20332 1.21046 1.19217 1.21008 0.88601 0.94798 1.50462 0.90129 1.20381 0.97291 0.84329 0.95149 1.64804 1.09501 1.19859 1.29485 1.22229 0.93142 1.00144 0.90534 1.23152 0.99629 0.97282 0.95224 0.89696 1.23742 0.90904 1.00315 1.03865 1.87900 1.12097 1.75998 1.33852 1.23297 0.99034 1.02085 0.94694 1.22494 0.92556 1.01646 0.97438 0.89153 1.22506 0.90383 0.95007 0.99517 0.92605 0.95284 0.99665 0.90647 0.90890 0.88662 0.87909 0.89064 0.88486 0.90225 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.51 -14.30 9.13 -34.44 -0.31 -14.62 16 8 H 0.08 2.47 8.03 -52.49 -0.42 2.05 16 9 C 0.16 3.68 3.43 -4.97 -0.02 3.67 16 10 N -0.51 -10.34 5.24 -233.38 -1.22 -11.56 16 11 C 0.07 1.23 6.19 -3.35 -0.02 1.21 16 12 C -0.13 -1.90 2.63 -89.48 -0.24 -2.13 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 14 C -0.04 -0.49 7.16 37.03 0.27 -0.23 16 15 S -0.33 -4.27 23.30 -107.50 -2.50 -6.78 16 16 C -0.04 -0.50 7.19 36.38 0.26 -0.24 16 17 C -0.12 -1.64 2.53 -89.99 -0.23 -1.87 16 18 H 0.09 1.24 8.12 -51.93 -0.42 0.82 16 19 C 0.06 0.88 6.49 -2.92 -0.02 0.86 16 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.03 0.70 7.14 -51.93 -0.37 0.33 16 22 H -0.01 -0.34 7.48 -51.93 -0.39 -0.73 16 23 H 0.08 1.49 7.31 -51.93 -0.38 1.11 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.04 0.70 7.87 -51.93 -0.41 0.29 16 LS Contribution 252.20 15.07 3.80 3.80 Total: -1.00 -29.67 252.20 -8.74 -38.41 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.52 Total: -2.45 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.41 Total: -11.47 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.45 Total: -38.06 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Atomic # 16 Polarization: -4.27 SS G_CDS: -2.50 Total: -6.78 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.67 -8.74 -38.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712380361.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.786 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds