Wall clock time and date at job start Mon Mar 30 2020 02:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46903 * 111.00106 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.46955 * 179.97438 * 12 11 10 14 14 H 1.08997 * 115.55137 * 330.58312 * 13 12 11 15 15 C 1.53004 * 117.49544 * 116.25017 * 13 12 11 16 16 C 1.52999 * 117.49521 * 184.90920 * 13 12 11 17 17 H 1.09005 * 117.49807 * 145.02146 * 16 13 12 18 18 C 1.50703 * 117.50236 * 0.02635 * 16 13 12 19 19 O 1.20829 * 119.99561 * 359.97438 * 18 16 13 20 20 O 1.34227 * 120.00220 * 180.02562 * 18 16 13 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 25 25 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 26 26 H 1.00900 * 110.99562 * 303.94873 * 11 10 9 27 27 H 1.08999 * 109.46866 * 299.99546 * 12 11 10 28 28 H 1.09000 * 109.47056 * 59.99263 * 12 11 10 29 29 H 1.08995 * 117.49894 * 214.97243 * 15 13 12 30 30 H 1.09001 * 117.50361 * 0.02562 * 15 13 12 31 31 H 0.96703 * 117.00095 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 2.4350 -6.0760 -0.0212 13 6 1.6348 -7.3800 -0.0271 14 1 0.6586 -7.3348 0.4556 15 6 1.7776 -8.2909 -1.2482 16 6 2.4179 -8.6897 0.0838 17 1 1.9566 -9.5064 0.6393 18 6 3.9182 -8.5966 0.1912 19 8 4.4581 -7.5157 0.1870 20 8 4.6546 -9.7144 0.2904 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.8718 -3.6005 -0.9002 25 1 2.8717 -3.6084 0.8798 26 1 0.8739 -4.9880 0.7641 27 1 3.0636 -6.0310 -0.9105 28 1 3.0623 -6.0389 0.8694 29 1 0.8955 -8.8452 -1.5684 30 1 2.4419 -7.9613 -2.0471 31 1 5.6130 -9.6042 0.3574 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715259594.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:34 Heat of formation + Delta-G solvation = -75.605912 kcal Electronic energy + Delta-G solvation = -13647.698252 eV Core-core repulsion = 11122.555052 eV Total energy + Delta-G solvation = -2525.143201 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.64868 -37.74503 -36.02214 -35.16541 -32.75792 -29.61436 -26.21861 -25.11761 -23.23044 -21.41269 -20.73904 -19.91179 -18.31459 -16.70924 -16.18902 -15.86180 -15.08808 -14.88712 -14.42389 -13.98123 -13.42538 -12.84921 -12.62634 -12.39187 -12.05853 -11.75018 -11.34514 -11.06109 -10.87686 -10.73613 -10.46856 -10.40280 -10.32244 -9.81395 -9.30649 -9.09019 -8.30427 -7.68528 -5.95386 -3.97424 1.96488 2.80553 3.35625 3.41294 3.45174 3.57464 4.30932 4.50938 4.63889 4.77825 5.08043 5.25290 5.40072 5.40608 5.61039 5.63828 5.82617 6.07395 6.28069 6.40475 6.48807 6.53884 7.05961 7.55366 7.76459 7.79379 7.89950 8.04627 8.14729 8.49714 9.09928 9.66023 11.16187 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063015 B = 0.004850 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.231631 B = 5772.115174 C = 6113.471338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.693 5.693 12 C 0.091 3.909 13 C -0.103 4.103 14 H 0.122 0.878 15 C -0.139 4.139 16 C -0.177 4.177 17 H 0.134 0.866 18 C 0.504 3.496 19 O -0.503 6.503 20 O -0.518 6.518 21 H 0.260 0.740 22 H 0.014 0.986 23 H 0.025 0.975 24 H 0.057 0.943 25 H 0.015 0.985 26 H 0.333 0.667 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 -19.048 0.338 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.061 4.061 11 N -0.324 5.324 12 C -0.038 4.038 13 C -0.121 4.121 14 H 0.140 0.860 15 C -0.176 4.176 16 C -0.196 4.196 17 H 0.152 0.848 18 C 0.347 3.653 19 O -0.390 6.390 20 O -0.330 6.330 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.033 0.967 26 H 0.150 0.850 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.360 -18.670 -0.379 19.176 hybrid contribution 1.458 0.893 1.012 1.987 sum 5.819 -17.777 0.633 18.715 Atomic orbital electron populations 1.69979 1.06027 1.26518 1.50856 1.25001 0.94839 0.99184 0.95347 0.86585 0.79808 0.83445 0.78102 1.20640 1.21236 1.19932 1.21205 0.93029 0.91062 1.50637 0.92763 1.19076 0.94038 0.90456 0.97676 1.22123 0.96898 0.88329 0.98716 1.60639 1.19993 1.02263 1.49538 1.21618 0.92979 0.87529 1.01667 1.22563 0.99551 0.89583 1.00412 0.85982 1.23144 1.02106 1.02183 0.90182 1.21854 0.87673 1.03569 1.06528 0.84818 1.22483 0.89746 0.81228 0.71889 1.90791 1.73666 1.29149 1.45385 1.84504 1.25336 1.37874 1.85306 0.93041 0.96813 0.95643 0.92429 0.96670 0.85000 0.90786 0.94111 0.87134 0.87930 0.73201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.68 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.52 5.62 -3.83 -0.02 1.50 16 11 N -0.69 -13.08 6.50 -113.78 -0.74 -13.82 16 12 C 0.09 1.47 4.23 -3.82 -0.02 1.46 16 13 C -0.10 -1.23 5.95 -90.62 -0.54 -1.77 16 14 H 0.12 1.32 8.13 -51.93 -0.42 0.90 16 15 C -0.14 -1.38 9.89 -26.69 -0.26 -1.65 16 16 C -0.18 -1.78 6.30 -91.73 -0.58 -2.36 16 17 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 18 C 0.50 5.84 8.09 36.01 0.29 6.14 16 19 O -0.50 -7.58 13.87 -18.75 -0.26 -7.84 16 20 O -0.52 -4.53 13.42 -39.25 -0.53 -5.06 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.33 5.90 8.72 -39.29 -0.34 5.55 16 27 H 0.07 1.29 7.30 -51.93 -0.38 0.91 16 28 H 0.04 0.71 6.93 -51.93 -0.36 0.35 16 29 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.09 8.03 -51.93 -0.42 0.68 16 31 H 0.41 1.92 9.10 45.56 0.41 2.33 16 LS Contribution 270.94 15.07 4.08 4.08 Total: -1.00 -33.55 270.94 -7.00 -40.54 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -3.58 Total: 1.84 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.68 Total: -10.15 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.00 Total: -40.55 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.79 Total: -12.90 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.55 -7.00 -40.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715259594.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.061 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds