Wall clock time and date at job start Mon Mar 30 2020 02:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46903 * 111.00106 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.46955 * 179.97438 * 12 11 10 14 14 H 1.08997 * 115.55137 * 330.58312 * 13 12 11 15 15 C 1.53004 * 117.49544 * 116.25017 * 13 12 11 16 16 C 1.52999 * 117.49521 * 184.90920 * 13 12 11 17 17 H 1.09005 * 117.49807 * 145.02146 * 16 13 12 18 18 C 1.50703 * 117.50236 * 0.02635 * 16 13 12 19 19 O 1.20829 * 119.99561 * 359.97438 * 18 16 13 20 20 O 1.34227 * 120.00220 * 180.02562 * 18 16 13 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 25 25 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 26 26 H 1.00900 * 110.99562 * 303.94873 * 11 10 9 27 27 H 1.08999 * 109.46866 * 299.99546 * 12 11 10 28 28 H 1.09000 * 109.47056 * 59.99263 * 12 11 10 29 29 H 1.08995 * 117.49894 * 214.97243 * 15 13 12 30 30 H 1.09001 * 117.50361 * 0.02562 * 15 13 12 31 31 H 0.96703 * 117.00095 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 2.4350 -6.0760 -0.0212 13 6 1.6348 -7.3800 -0.0271 14 1 0.6586 -7.3348 0.4556 15 6 1.7776 -8.2909 -1.2482 16 6 2.4179 -8.6897 0.0838 17 1 1.9566 -9.5064 0.6393 18 6 3.9182 -8.5966 0.1912 19 8 4.4581 -7.5157 0.1870 20 8 4.6546 -9.7144 0.2904 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.8718 -3.6005 -0.9002 25 1 2.8717 -3.6084 0.8798 26 1 0.8739 -4.9880 0.7641 27 1 3.0636 -6.0310 -0.9105 28 1 3.0623 -6.0389 0.8694 29 1 0.8955 -8.8452 -1.5684 30 1 2.4419 -7.9613 -2.0471 31 1 5.6130 -9.6042 0.3574 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715259594.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:34 Heat of formation + Delta-G solvation = -100.548877 kcal Electronic energy + Delta-G solvation = -13648.779860 eV Core-core repulsion = 11122.555052 eV Total energy + Delta-G solvation = -2526.224809 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.55087 -38.72503 -37.07220 -36.64036 -34.85185 -31.54381 -27.73701 -26.24930 -24.97641 -22.60619 -22.24228 -21.03215 -19.18000 -18.53753 -17.57823 -16.88982 -16.51692 -16.39083 -15.95893 -15.17560 -14.91191 -14.41651 -14.16608 -13.88178 -13.39346 -13.07174 -12.86891 -12.60959 -12.53373 -12.31355 -12.05459 -11.66059 -11.43120 -11.37836 -11.15992 -11.10425 -10.56564 -9.26816 -8.21083 -6.32690 1.07869 1.39810 1.41791 1.52922 2.05801 2.40242 2.70219 3.12042 3.25153 3.79320 3.88867 3.94930 4.36000 4.43361 4.46421 4.56586 4.70415 4.84648 4.87387 5.01671 5.03879 5.22202 5.43191 5.61906 5.66203 5.77249 6.12157 6.25642 6.56067 6.83572 7.00545 7.36344 8.91189 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063015 B = 0.004850 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.231631 B = 5772.115174 C = 6113.471338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.033 3.967 10 C 0.084 3.916 11 N -0.693 5.693 12 C 0.100 3.900 13 C -0.124 4.124 14 H 0.138 0.862 15 C -0.127 4.127 16 C -0.163 4.163 17 H 0.167 0.833 18 C 0.504 3.496 19 O -0.547 6.547 20 O -0.508 6.508 21 H 0.265 0.735 22 H -0.005 1.005 23 H -0.002 1.002 24 H 0.051 0.949 25 H 0.012 0.988 26 H 0.341 0.659 27 H 0.056 0.944 28 H 0.026 0.974 29 H 0.141 0.859 30 H 0.091 0.909 31 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.206 -20.096 0.378 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.045 4.045 11 N -0.325 5.325 12 C -0.029 4.029 13 C -0.142 4.142 14 H 0.156 0.844 15 C -0.164 4.164 16 C -0.182 4.182 17 H 0.184 0.816 18 C 0.348 3.652 19 O -0.438 6.438 20 O -0.322 6.322 21 H 0.074 0.926 22 H 0.013 0.987 23 H 0.016 0.984 24 H 0.069 0.931 25 H 0.030 0.970 26 H 0.158 0.842 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.159 0.841 30 H 0.110 0.890 31 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 4.729 -19.767 -0.338 20.327 hybrid contribution 1.369 1.131 0.996 2.036 sum 6.097 -18.636 0.658 19.619 Atomic orbital electron populations 1.70102 1.07754 1.27886 1.51249 1.25963 0.95808 1.03303 0.94461 0.85406 0.78555 0.78238 0.78582 1.19648 1.20351 1.18978 1.21609 0.93429 0.92421 1.51268 0.92544 1.18914 0.94188 0.91987 0.95319 1.21745 0.95665 0.88834 0.98223 1.60550 1.20288 1.01644 1.49981 1.21499 0.92696 0.88591 1.00093 1.22428 1.00121 0.88301 1.03380 0.84437 1.23263 1.02809 1.00895 0.89391 1.22001 0.86672 1.02775 1.06792 0.81553 1.22829 0.90609 0.81010 0.70728 1.90788 1.74599 1.30822 1.47542 1.84463 1.26876 1.36397 1.84465 0.92615 0.98655 0.98400 0.93071 0.96972 0.84165 0.92530 0.95630 0.84064 0.89032 0.71149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 2 C 0.00 0.16 5.46 84.66 0.46 0.63 16 3 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.55 -32.72 9.11 25.60 0.23 -32.49 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.87 5.23 29.85 0.16 2.02 16 10 C 0.08 3.91 5.62 86.30 0.49 4.39 16 11 N -0.69 -26.48 6.50 -513.90 -3.34 -29.82 16 12 C 0.10 3.25 4.23 86.30 0.36 3.61 16 13 C -0.12 -2.78 5.95 -10.79 -0.06 -2.85 16 14 H 0.14 2.67 8.13 -2.39 -0.02 2.65 16 15 C -0.13 -2.20 9.89 30.62 0.30 -1.90 16 16 C -0.16 -2.85 6.30 -11.51 -0.07 -2.93 16 17 H 0.17 1.86 8.14 -2.38 -0.02 1.84 16 18 C 0.50 10.93 8.09 71.24 0.58 11.51 16 19 O -0.55 -16.47 13.87 21.95 0.30 -16.17 16 20 O -0.51 -7.75 13.42 -51.38 -0.69 -8.44 16 21 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 22 H 0.00 -0.29 8.14 -2.38 -0.02 -0.31 16 23 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 24 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16 25 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.34 12.14 8.72 -89.69 -0.78 11.36 16 27 H 0.06 2.02 7.30 -2.39 -0.02 2.00 16 28 H 0.03 0.91 6.93 -2.39 -0.02 0.89 16 29 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.82 8.03 -2.39 -0.02 1.80 16 31 H 0.43 3.18 9.10 -74.06 -0.67 2.51 16 Total: -1.00 -73.00 270.94 0.71 -72.29 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -0.32 Total: 10.22 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 2.44 Total: -18.00 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -3.06 Total: -87.30 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.39 Total: -24.61 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -73.00 0.71 -72.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715259594.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.260 kcal (2) G-P(sol) polarization free energy of solvation -73.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds