Wall clock time and date at job start Mon Mar 30 2020 02:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99931 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47249 * 179.97438 * 12 11 10 14 14 H 1.09002 * 115.55031 * 330.72609 * 13 12 11 15 15 C 1.53005 * 117.49912 * 116.38861 * 13 12 11 16 16 C 1.52999 * 117.50309 * 185.01212 * 13 12 11 17 17 H 1.09000 * 117.49471 * 0.02562 * 16 13 12 18 18 C 1.50693 * 117.49900 * 145.02166 * 16 13 12 19 19 O 1.20823 * 120.00476 * 0.02562 * 18 16 13 20 20 O 1.34238 * 120.00111 * 180.02562 * 18 16 13 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 25 25 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 26 26 H 1.00900 * 110.99536 * 303.95189 * 11 10 9 27 27 H 1.08998 * 109.46875 * 300.00097 * 12 11 10 28 28 H 1.09005 * 109.46991 * 60.00073 * 12 11 10 29 29 H 1.08994 * 117.50167 * 214.98450 * 15 13 12 30 30 H 1.09000 * 117.49539 * 359.97438 * 15 13 12 31 31 H 0.96695 * 117.00371 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 2.4352 -6.0760 -0.0018 13 6 1.6351 -7.3801 -0.0018 14 1 0.6583 -7.3323 0.4795 15 6 1.7794 -8.2974 -1.2178 16 6 2.4181 -8.6893 0.1162 17 1 3.5031 -8.6214 0.1942 18 6 1.7799 -9.8144 0.8892 19 8 0.6895 -9.6630 1.3873 20 8 2.4228 -10.9850 1.0246 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 2.8719 -3.6044 -0.8906 25 1 2.8719 -3.6044 0.8894 26 1 0.8741 -4.9846 0.7800 27 1 3.0631 -6.0345 -0.8918 28 1 3.0632 -6.0354 0.8882 29 1 0.8977 -8.8534 -1.5363 30 1 2.4440 -7.9715 -2.0180 31 1 1.9733 -11.6770 1.5287 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715307862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:38 Heat of formation + Delta-G solvation = -80.673926 kcal Electronic energy + Delta-G solvation = -13357.760936 eV Core-core repulsion = 10832.397969 eV Total energy + Delta-G solvation = -2525.362966 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.60388 -37.83582 -36.23794 -35.20661 -32.81142 -29.71585 -26.41656 -25.03570 -23.29478 -21.37263 -20.80545 -19.94947 -18.33461 -17.12586 -16.26920 -15.83977 -15.33511 -14.57097 -14.45249 -14.28704 -13.46719 -13.00366 -12.75751 -12.27634 -12.07789 -11.82238 -11.30669 -11.09755 -10.94857 -10.87906 -10.66245 -10.47738 -10.40709 -9.93009 -9.38050 -9.14148 -8.34580 -7.83935 -5.98964 -4.01721 1.89009 2.72102 3.32697 3.38861 3.42105 3.57112 4.37018 4.48771 4.55521 4.72416 5.00408 5.18268 5.36296 5.36965 5.51104 5.64119 5.75236 5.79573 6.19427 6.26787 6.31958 6.39311 6.97001 7.45709 7.68400 7.72833 7.81936 7.94471 8.08649 8.43742 9.05584 9.62013 11.12487 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.086780 B = 0.004127 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.578540 B = 6783.263809 C = 6876.691378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.066 3.934 11 N -0.689 5.689 12 C 0.086 3.914 13 C -0.103 4.103 14 H 0.123 0.877 15 C -0.136 4.136 16 C -0.177 4.177 17 H 0.135 0.865 18 C 0.509 3.491 19 O -0.514 6.514 20 O -0.515 6.515 21 H 0.261 0.739 22 H 0.014 0.986 23 H 0.026 0.974 24 H 0.059 0.941 25 H 0.016 0.984 26 H 0.338 0.662 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.416 -18.608 0.143 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.321 5.321 12 C -0.043 4.043 13 C -0.121 4.121 14 H 0.140 0.860 15 C -0.173 4.173 16 C -0.196 4.196 17 H 0.153 0.847 18 C 0.352 3.648 19 O -0.402 6.402 20 O -0.327 6.327 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.044 0.956 24 H 0.077 0.923 25 H 0.034 0.966 26 H 0.156 0.844 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 5.085 -18.133 -0.636 18.844 hybrid contribution 0.524 0.387 1.341 1.491 sum 5.609 -17.746 0.704 18.625 Atomic orbital electron populations 1.69976 1.06041 1.26607 1.50586 1.25011 0.94848 0.99237 0.95296 0.86579 0.79825 0.83437 0.78053 1.20712 1.19876 1.21188 1.21175 0.92980 0.91016 1.50955 0.92747 1.19079 0.94041 0.90384 0.97823 1.22173 0.97031 0.88320 0.98700 1.60559 1.19627 1.01871 1.49995 1.21532 0.93862 0.88400 1.00541 1.22545 1.00535 0.88614 1.00446 0.85953 1.23164 1.02206 1.01796 0.90163 1.21839 1.00921 0.94172 1.02715 0.84731 1.22438 0.82916 0.82183 0.77239 1.90734 1.21475 1.82004 1.45970 1.84518 1.52749 1.24400 1.71003 0.92972 0.96752 0.95553 0.92268 0.96571 0.84394 0.90727 0.95057 0.88089 0.86917 0.73190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.63 5.23 -27.89 -0.15 0.49 16 10 C 0.07 1.38 5.62 -3.82 -0.02 1.36 16 11 N -0.69 -12.20 6.50 -113.78 -0.74 -12.94 16 12 C 0.09 1.19 5.97 -3.83 -0.02 1.17 16 13 C -0.10 -1.25 5.46 -90.62 -0.50 -1.75 16 14 H 0.12 1.68 7.66 -51.93 -0.40 1.28 16 15 C -0.14 -1.36 9.88 -26.73 -0.26 -1.63 16 16 C -0.18 -1.81 6.02 -91.77 -0.55 -2.36 16 17 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 18 C 0.51 5.68 8.11 36.00 0.29 5.97 16 19 O -0.51 -7.40 17.02 -18.75 -0.32 -7.72 16 20 O -0.51 -4.28 13.42 -39.28 -0.53 -4.81 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.34 5.87 8.72 -39.29 -0.34 5.52 16 27 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.11 0.98 8.03 -51.93 -0.42 0.56 16 31 H 0.41 1.63 9.10 45.56 0.41 2.04 16 LS Contribution 276.39 15.07 4.17 4.17 Total: -1.00 -32.83 276.39 -6.98 -39.80 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -3.65 Total: 1.56 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -1.62 Total: -10.40 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.00 Total: -39.30 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.85 Total: -12.53 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.83 -6.98 -39.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715307862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.869 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds