Wall clock time and date at job start Mon Mar 30 2020 02:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99931 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47249 * 179.97438 * 12 11 10 14 14 H 1.09002 * 115.55031 * 330.72609 * 13 12 11 15 15 C 1.53005 * 117.49912 * 116.38861 * 13 12 11 16 16 C 1.52999 * 117.50309 * 185.01212 * 13 12 11 17 17 H 1.09000 * 117.49471 * 0.02562 * 16 13 12 18 18 C 1.50693 * 117.49900 * 145.02166 * 16 13 12 19 19 O 1.20823 * 120.00476 * 0.02562 * 18 16 13 20 20 O 1.34238 * 120.00111 * 180.02562 * 18 16 13 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 25 25 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 26 26 H 1.00900 * 110.99536 * 303.95189 * 11 10 9 27 27 H 1.08998 * 109.46875 * 300.00097 * 12 11 10 28 28 H 1.09005 * 109.46991 * 60.00073 * 12 11 10 29 29 H 1.08994 * 117.50167 * 214.98450 * 15 13 12 30 30 H 1.09000 * 117.49539 * 359.97438 * 15 13 12 31 31 H 0.96695 * 117.00371 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 2.4352 -6.0760 -0.0018 13 6 1.6351 -7.3801 -0.0018 14 1 0.6583 -7.3323 0.4795 15 6 1.7794 -8.2974 -1.2178 16 6 2.4181 -8.6893 0.1162 17 1 3.5031 -8.6214 0.1942 18 6 1.7799 -9.8144 0.8892 19 8 0.6895 -9.6630 1.3873 20 8 2.4228 -10.9850 1.0246 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 2.8719 -3.6044 -0.8906 25 1 2.8719 -3.6044 0.8894 26 1 0.8741 -4.9846 0.7800 27 1 3.0631 -6.0345 -0.8918 28 1 3.0632 -6.0354 0.8882 29 1 0.8977 -8.8534 -1.5363 30 1 2.4440 -7.9715 -2.0180 31 1 1.9733 -11.6770 1.5287 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715307862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:37 Heat of formation + Delta-G solvation = -104.607270 kcal Electronic energy + Delta-G solvation = -13358.798763 eV Core-core repulsion = 10832.397969 eV Total energy + Delta-G solvation = -2526.400794 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.46595 -38.79991 -37.18557 -36.62066 -34.82765 -31.53522 -27.83922 -26.19202 -24.91376 -22.56170 -22.16553 -21.03997 -19.17353 -18.52237 -17.92339 -16.80887 -16.66323 -16.44010 -15.59447 -15.40568 -14.85190 -14.40978 -14.13460 -13.97854 -13.25002 -12.97600 -12.85728 -12.64583 -12.45959 -12.30875 -12.00780 -11.79755 -11.58057 -11.37759 -11.19086 -11.13916 -10.55334 -9.26312 -8.19306 -6.31043 1.03036 1.41740 1.43475 1.54689 1.97612 2.41816 2.71398 3.14255 3.33120 3.71372 3.81422 3.97681 4.30548 4.40873 4.50586 4.57552 4.68030 4.77922 4.83733 4.99864 5.08776 5.21891 5.46103 5.56245 5.68260 5.79685 6.14505 6.28880 6.51297 6.86756 6.96822 7.38418 8.93010 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.086780 B = 0.004127 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.578540 B = 6783.263809 C = 6876.691378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.261 1.261 6 H -0.283 1.283 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.029 3.971 10 C 0.084 3.916 11 N -0.698 5.698 12 C 0.092 3.908 13 C -0.123 4.123 14 H 0.101 0.899 15 C -0.124 4.124 16 C -0.165 4.165 17 H 0.159 0.841 18 C 0.513 3.487 19 O -0.554 6.554 20 O -0.506 6.506 21 H 0.264 0.736 22 H -0.011 1.011 23 H -0.005 1.005 24 H 0.064 0.936 25 H 0.021 0.979 26 H 0.337 0.663 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.102 0.898 30 H 0.132 0.868 31 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.414 -19.197 -0.219 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.185 1.185 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.009 4.009 10 C -0.045 4.045 11 N -0.329 5.329 12 C -0.037 4.037 13 C -0.142 4.142 14 H 0.119 0.881 15 C -0.161 4.161 16 C -0.184 4.184 17 H 0.176 0.824 18 C 0.357 3.643 19 O -0.445 6.445 20 O -0.319 6.319 21 H 0.072 0.928 22 H 0.007 0.993 23 H 0.013 0.987 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.155 0.845 27 H 0.105 0.895 28 H 0.056 0.944 29 H 0.120 0.880 30 H 0.150 0.850 31 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 7.108 -18.772 -0.995 20.098 hybrid contribution -0.123 0.456 1.467 1.541 sum 6.985 -18.317 0.471 19.609 Atomic orbital electron populations 1.70119 1.07916 1.27811 1.51476 1.26014 0.95771 1.03507 0.94634 0.85394 0.78667 0.78168 0.78474 1.19790 1.18506 1.20806 1.21633 0.93633 0.92188 1.50853 0.91900 1.18951 0.94424 0.92476 0.95043 1.21787 0.95546 0.88063 0.99072 1.60469 1.20369 1.01888 1.50209 1.21555 0.93386 0.87387 1.01405 1.22288 0.99965 0.88960 1.02973 0.88125 1.23279 1.02519 1.00150 0.90114 1.21916 1.01765 0.92372 1.02339 0.82388 1.22598 0.82260 0.82929 0.76475 1.90731 1.23247 1.82797 1.47765 1.84471 1.52403 1.24080 1.70961 0.92761 0.99251 0.98676 0.91795 0.96117 0.84516 0.89457 0.94395 0.87981 0.84966 0.70928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.54 5.23 29.85 0.16 1.70 16 10 C 0.08 3.50 5.62 86.30 0.49 3.99 16 11 N -0.70 -24.62 6.50 -513.88 -3.34 -27.96 16 12 C 0.09 2.39 5.97 86.30 0.51 2.90 16 13 C -0.12 -2.87 5.46 -10.79 -0.06 -2.93 16 14 H 0.10 2.82 7.66 -2.39 -0.02 2.80 16 15 C -0.12 -2.20 9.88 30.60 0.30 -1.90 16 16 C -0.16 -2.99 6.02 -11.54 -0.07 -3.06 16 17 H 0.16 2.14 8.14 -2.39 -0.02 2.12 16 18 C 0.51 10.61 8.11 71.23 0.58 11.18 16 19 O -0.55 -15.74 17.02 21.97 0.37 -15.37 16 20 O -0.51 -7.17 13.42 -51.49 -0.69 -7.86 16 21 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 22 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 23 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 24 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.34 11.96 8.72 -89.69 -0.78 11.18 16 27 H 0.09 2.06 7.88 -2.39 -0.02 2.04 16 28 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.13 1.85 8.03 -2.39 -0.02 1.83 16 31 H 0.43 2.43 9.10 -74.06 -0.67 1.76 16 Total: -1.00 -71.01 276.39 0.94 -70.08 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -0.32 Total: 10.84 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 2.60 Total: -18.75 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -3.06 Total: -85.31 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.32 Total: -23.23 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -71.01 0.94 -70.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715307862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.530 kcal (2) G-P(sol) polarization free energy of solvation -71.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds