Wall clock time and date at job start Mon Mar 30 2020 02:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46978 * 180.02562 * 12 11 10 14 14 H 1.08999 * 115.55546 * 29.33152 * 13 12 11 15 15 C 1.53004 * 117.49776 * 243.62213 * 13 12 11 16 16 C 1.53000 * 59.99932 * 252.51185 * 15 13 12 17 17 H 1.09009 * 117.49677 * 252.50942 * 16 15 13 18 18 C 1.50701 * 117.49997 * 107.49080 * 16 15 13 19 19 O 1.20819 * 119.99850 * 291.37994 * 18 16 15 20 20 O 1.34231 * 119.99664 * 111.37452 * 18 16 15 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 1.00899 * 111.00283 * 303.95539 * 11 10 9 27 27 H 1.08995 * 109.47087 * 299.99901 * 12 11 10 28 28 H 1.09002 * 109.46903 * 59.99922 * 12 11 10 29 29 H 1.09005 * 117.50012 * 0.02562 * 15 13 12 30 30 H 1.09001 * 117.50294 * 145.02106 * 15 13 12 31 31 H 0.96701 * 116.99636 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 2.4354 -6.0759 0.0024 13 6 1.6353 -7.3800 0.0022 14 1 0.6589 -7.3325 -0.4798 15 6 1.7795 -8.2973 1.2183 16 6 2.4184 -8.6891 -0.1156 17 1 1.9568 -9.5031 -0.6749 18 6 3.9186 -8.5954 -0.2228 19 8 4.4585 -7.5145 -0.2135 20 8 4.6550 -9.7126 -0.3284 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 2.8714 -3.6047 -0.8890 25 1 2.8726 -3.6039 0.8910 26 1 0.8747 -4.9842 0.7836 27 1 3.0633 -6.0352 -0.8876 28 1 3.0634 -6.0345 0.8923 29 1 2.4440 -7.9715 2.0186 30 1 0.8978 -8.8535 1.5366 31 1 5.6134 -9.6021 -0.3950 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715307863.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:40 Heat of formation + Delta-G solvation = -75.847772 kcal Electronic energy + Delta-G solvation = -13649.261128 eV Core-core repulsion = 11124.107439 eV Total energy + Delta-G solvation = -2525.153688 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65860 -37.76840 -36.02985 -35.15566 -32.75464 -29.60969 -26.22044 -25.14172 -23.27724 -21.34060 -20.73128 -19.92020 -18.32640 -16.79032 -16.20325 -15.81859 -15.19862 -14.78506 -14.39277 -13.90043 -13.52815 -12.83177 -12.59227 -12.50325 -12.08382 -11.73690 -11.36872 -11.06297 -10.87561 -10.74004 -10.59723 -10.43836 -10.07748 -9.85555 -9.30644 -9.09159 -8.30569 -7.72432 -5.95345 -3.97444 1.95892 2.80411 3.35656 3.41306 3.45137 3.54884 4.28107 4.50818 4.59645 4.76775 5.08682 5.23614 5.37103 5.40615 5.58093 5.65629 5.83713 6.09026 6.25167 6.40245 6.50289 6.54650 7.05945 7.55430 7.76226 7.79589 7.89912 8.05092 8.14913 8.49705 9.09915 9.66040 11.16219 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063033 B = 0.004851 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.106164 B = 5770.729341 C = 6115.161759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.068 3.932 11 N -0.694 5.694 12 C 0.092 3.908 13 C -0.105 4.105 14 H 0.129 0.871 15 C -0.150 4.150 16 C -0.171 4.171 17 H 0.135 0.865 18 C 0.504 3.496 19 O -0.502 6.502 20 O -0.518 6.518 21 H 0.260 0.740 22 H 0.025 0.975 23 H 0.014 0.986 24 H 0.058 0.942 25 H 0.015 0.985 26 H 0.334 0.666 27 H 0.083 0.917 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.835 -19.040 1.186 19.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.061 4.061 11 N -0.324 5.324 12 C -0.038 4.038 13 C -0.123 4.123 14 H 0.147 0.853 15 C -0.187 4.187 16 C -0.190 4.190 17 H 0.153 0.847 18 C 0.347 3.653 19 O -0.389 6.389 20 O -0.330 6.330 21 H 0.070 0.930 22 H 0.044 0.956 23 H 0.032 0.968 24 H 0.076 0.924 25 H 0.033 0.967 26 H 0.150 0.850 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.119 0.881 30 H 0.129 0.871 31 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.341 -18.665 0.535 19.171 hybrid contribution 1.478 0.888 0.815 1.907 sum 5.819 -17.777 1.350 18.754 Atomic orbital electron populations 1.69973 1.06026 1.26527 1.50856 1.24998 0.94835 0.99180 0.95345 0.86587 0.79804 0.83453 0.78109 1.20634 1.21237 1.19935 1.21203 0.93031 0.91059 1.50642 0.92759 1.19079 0.94038 0.90455 0.97682 1.22125 0.96897 0.88305 0.98732 1.60629 1.20059 1.02308 1.49446 1.21620 0.92918 0.87571 1.01642 1.22677 1.00247 0.89559 0.99816 0.85300 1.23207 1.02316 1.02885 0.90329 1.21775 0.87680 1.03640 1.05934 0.84705 1.22474 0.89737 0.81235 0.71901 1.90785 1.73648 1.29138 1.45365 1.84504 1.25351 1.37885 1.85268 0.93036 0.95643 0.96803 0.92371 0.96710 0.84950 0.89897 0.95118 0.88141 0.87080 0.73186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.67 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.52 5.62 -3.82 -0.02 1.50 16 11 N -0.69 -13.09 6.50 -113.78 -0.74 -13.83 16 12 C 0.09 1.48 4.23 -3.82 -0.02 1.47 16 13 C -0.10 -1.26 5.95 -90.62 -0.54 -1.80 16 14 H 0.13 1.47 8.14 -51.93 -0.42 1.04 16 15 C -0.15 -1.43 9.88 -26.73 -0.26 -1.69 16 16 C -0.17 -1.72 6.30 -91.77 -0.58 -2.30 16 17 H 0.14 1.05 8.14 -51.92 -0.42 0.63 16 18 C 0.50 5.86 8.09 36.01 0.29 6.15 16 19 O -0.50 -7.59 13.87 -18.74 -0.26 -7.85 16 20 O -0.52 -4.54 13.42 -39.26 -0.53 -5.07 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.33 5.92 8.73 -39.29 -0.34 5.58 16 27 H 0.08 1.49 6.93 -51.93 -0.36 1.13 16 28 H 0.03 0.52 7.30 -51.93 -0.38 0.14 16 29 H 0.10 1.02 8.03 -51.93 -0.42 0.60 16 30 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.41 1.92 9.10 45.56 0.41 2.33 16 LS Contribution 270.95 15.07 4.08 4.08 Total: -1.00 -33.47 270.95 -7.00 -40.46 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -3.58 Total: 1.93 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.68 Total: -10.13 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.00 Total: -40.55 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.79 Total: -12.91 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.47 -7.00 -40.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715307863.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.384 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds