Wall clock time and date at job start Mon Mar 30 2020 02:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99867 * 2 1 4 4 H 1.48502 * 109.46898 * 269.99742 * 3 2 1 5 5 H 1.48493 * 109.47166 * 29.99910 * 3 2 1 6 6 H 1.48498 * 109.47089 * 150.00061 * 3 2 1 7 7 C 1.37878 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99640 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00591 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47241 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99797 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00520 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99738 * 179.97438 * 11 10 9 14 14 O 1.42899 * 109.46942 * 179.97438 * 13 11 10 15 15 C 1.42902 * 113.99903 * 179.97438 * 14 13 11 16 16 C 1.53786 * 113.61284 * 209.99760 * 15 14 13 17 17 C 1.53781 * 87.17350 * 220.06071 * 16 15 14 18 18 C 1.53782 * 87.08260 * 25.39213 * 17 16 15 19 19 H 0.96997 * 120.00217 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47055 * 59.99508 * 9 7 2 21 21 H 1.09006 * 109.46770 * 299.99763 * 9 7 2 22 22 H 0.96994 * 120.00077 * 359.97438 * 10 9 7 23 23 H 1.08998 * 109.47087 * 60.00051 * 13 11 10 24 24 H 1.08997 * 109.47002 * 299.99406 * 13 11 10 25 25 H 1.08993 * 112.90736 * 341.24804 * 15 14 13 26 26 H 1.09002 * 113.61357 * 105.46987 * 16 15 14 27 27 H 1.09002 * 113.61608 * 334.65149 * 16 15 14 28 28 H 1.09001 * 113.61695 * 139.93969 * 17 16 15 29 29 H 1.08997 * 113.61223 * 270.84552 * 17 16 15 30 30 H 1.08997 * 113.61668 * 89.11298 * 18 17 16 31 31 H 1.08998 * 113.61674 * 219.93807 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9998 -2.5752 0.0010 11 6 5.3249 -2.8214 0.0020 12 8 6.1131 -1.8997 0.0025 13 6 5.8273 -4.2423 0.0024 14 8 7.2563 -4.2423 0.0029 15 6 7.8375 -5.5477 0.0039 16 6 9.2027 -5.6136 0.7089 17 6 9.6528 -6.5600 -0.4166 18 6 8.5833 -5.8932 -1.2979 19 1 -0.4850 0.8400 -0.0004 20 1 3.8745 -0.6799 0.8911 21 1 3.8752 -0.6804 -0.8889 22 1 3.3696 -3.3124 0.0010 23 1 5.4646 -4.7562 -0.8878 24 1 5.4634 -4.7560 0.8922 25 1 7.1415 -6.3218 0.3270 26 1 9.1653 -6.0882 1.6895 27 1 9.7353 -4.6627 0.7189 28 1 10.6727 -6.3802 -0.7565 29 1 9.4538 -7.6113 -0.2088 30 1 8.9456 -5.0181 -1.8374 31 1 8.0469 -6.5932 -1.9384 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716833498.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:01 Heat of formation + Delta-G solvation = -67.449665 kcal Electronic energy + Delta-G solvation = -13730.029952 eV Core-core repulsion = 11205.240432 eV Total energy + Delta-G solvation = -2524.789519 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.53480 -38.60342 -35.79129 -34.25406 -32.37314 -29.09715 -26.85463 -25.78366 -24.54958 -22.04163 -20.15392 -19.69365 -17.35216 -17.21598 -16.13980 -15.77491 -15.29880 -15.10089 -14.38980 -13.96383 -13.74926 -12.94264 -12.58432 -12.52358 -12.35706 -11.88811 -11.80264 -11.42705 -11.02693 -10.86461 -10.75176 -10.56281 -9.96929 -9.50596 -9.48199 -9.14859 -8.78425 -8.16935 -6.22100 -4.24608 3.19359 3.26732 3.29880 3.36216 3.43239 4.30009 4.33995 4.42549 4.52722 4.70159 4.77318 5.06098 5.13217 5.27032 5.38144 5.40302 5.50535 5.63830 5.69159 5.79283 5.98493 6.13144 6.78867 7.06559 7.13121 7.27088 7.37521 8.12768 8.49008 8.74211 8.91937 9.37943 10.89761 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.082318 B = 0.005102 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.064091 B = 5486.375866 C = 5684.230370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.221 3.779 10 N -0.705 5.705 11 C 0.500 3.500 12 O -0.539 6.539 13 C 0.043 3.957 14 O -0.348 6.348 15 C 0.057 3.943 16 C -0.137 4.137 17 C -0.142 4.142 18 C -0.157 4.157 19 H 0.268 0.732 20 H 0.026 0.974 21 H 0.021 0.979 22 H 0.397 0.603 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.843 -13.306 -0.243 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.100 3.900 10 N -0.356 5.356 11 C 0.284 3.716 12 O -0.416 6.416 13 C -0.037 4.037 14 O -0.266 6.266 15 C -0.001 4.001 16 C -0.174 4.174 17 C -0.179 4.179 18 C -0.195 4.195 19 H 0.078 0.922 20 H 0.044 0.956 21 H 0.039 0.961 22 H 0.230 0.770 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.342 -12.322 -0.239 18.910 hybrid contribution -0.264 0.243 -0.038 0.361 sum 14.078 -12.079 -0.277 18.552 Atomic orbital electron populations 1.69875 1.06217 1.27467 1.49402 1.24789 0.94792 0.99191 0.93809 0.86815 0.80600 0.83183 0.79105 1.19803 1.20861 1.18464 1.21084 0.88451 0.95268 1.53421 0.90206 1.19508 0.95230 0.78399 0.96911 1.46087 1.05210 1.11201 1.73054 1.20177 0.83326 0.90156 0.77960 1.90674 1.55444 1.45978 1.49513 1.22326 0.83139 0.96219 1.02042 1.88101 1.17472 1.26490 1.94508 1.23841 0.93967 0.85483 0.96843 1.23205 0.95691 1.00513 0.98029 1.22650 0.99309 0.98685 0.97292 1.23520 0.97758 1.01018 0.97207 0.92231 0.95598 0.96064 0.76980 0.90644 0.90626 0.89482 0.91088 0.88990 0.90824 0.90097 0.89095 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.54 -14.98 9.83 -34.44 -0.34 -15.32 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.85 16 9 C 0.22 5.53 4.50 -5.20 -0.02 5.50 16 10 N -0.70 -14.44 5.55 -61.47 -0.34 -14.79 16 11 C 0.50 9.99 7.91 -10.98 -0.09 9.90 16 12 O -0.54 -13.24 16.50 -14.35 -0.24 -13.48 16 13 C 0.04 0.62 6.26 36.01 0.23 0.85 16 14 O -0.35 -5.48 9.89 -55.14 -0.55 -6.03 16 15 C 0.06 0.64 4.32 -25.82 -0.11 0.53 16 16 C -0.14 -1.35 7.91 -25.92 -0.20 -1.56 16 17 C -0.14 -1.15 8.08 -25.92 -0.21 -1.36 16 18 C -0.16 -1.55 7.92 -25.82 -0.20 -1.75 16 19 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 20 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 21 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 22 H 0.40 6.94 8.32 -40.82 -0.34 6.60 16 23 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 268.55 15.07 4.05 4.05 Total: -1.00 -33.19 268.55 -6.50 -39.69 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -4.48 Total: 0.48 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.05 Total: -1.10 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.43 Total: -40.52 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.78 Total: -19.51 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.19 -6.50 -39.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716833498.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.763 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds