Wall clock time and date at job start Mon Mar 30 2020 02:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00397 * 2 1 4 4 H 1.48494 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47236 * 300.00545 * 3 2 1 6 6 H 1.48500 * 109.46664 * 60.00163 * 3 2 1 7 7 C 1.37882 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00242 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47232 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47364 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00169 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99922 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00037 * 180.02562 * 12 11 10 15 15 O 1.42905 * 109.46972 * 180.02562 * 14 12 11 16 16 C 1.42899 * 113.99778 * 180.02562 * 15 14 12 17 17 C 1.52997 * 117.49619 * 218.61866 * 16 15 14 18 18 C 1.52994 * 60.00066 * 252.50870 * 17 16 15 19 19 H 0.97002 * 119.99803 * 359.97438 * 1 2 3 20 20 H 1.08992 * 109.47396 * 60.00161 * 9 7 2 21 21 H 1.09004 * 109.47103 * 300.00314 * 9 7 2 22 22 H 1.09004 * 109.47694 * 59.99739 * 10 9 7 23 23 H 1.09004 * 109.46785 * 299.99838 * 10 9 7 24 24 H 0.96996 * 119.99986 * 359.97438 * 11 10 9 25 25 H 1.09000 * 109.47247 * 60.00371 * 14 12 11 26 26 H 1.09001 * 109.47358 * 299.99798 * 14 12 11 27 27 H 1.08993 * 115.55216 * 4.32956 * 16 15 14 28 28 H 1.08997 * 117.50274 * 0.02562 * 17 16 15 29 29 H 1.09006 * 117.49745 * 145.01842 * 17 16 15 30 30 H 1.08997 * 117.50498 * 252.50952 * 18 17 16 31 31 H 1.09004 * 117.51701 * 107.48047 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5126 -4.9308 0.0001 12 6 2.1865 -6.0981 -0.0003 13 8 3.3993 -6.0981 -0.0007 14 6 1.4329 -7.4031 -0.0003 15 8 2.3616 -8.4893 -0.0002 16 6 1.7469 -9.7794 -0.0007 17 6 2.4001 -10.8734 0.8464 18 6 2.5044 -10.9225 -0.6792 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8902 21 1 0.6246 -2.5570 0.8897 22 1 2.8719 -3.6045 0.8894 23 1 2.8718 -3.6044 -0.8906 24 1 0.5427 -4.9308 0.0008 25 1 0.8060 -7.4608 -0.8901 26 1 0.8066 -7.4610 0.8899 27 1 0.6596 -9.7821 -0.0753 28 1 3.2983 -10.6090 1.4044 29 1 1.7422 -11.5960 1.3294 30 1 1.9153 -11.6774 -1.2000 31 1 3.4713 -10.6904 -1.1256 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716922265.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:57 Heat of formation + Delta-G solvation = -87.224731 kcal Electronic energy + Delta-G solvation = -13437.120654 eV Core-core repulsion = 10911.473624 eV Total energy + Delta-G solvation = -2525.647030 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.80283 -39.19934 -36.64790 -35.76507 -34.83987 -31.87479 -28.98363 -26.35874 -23.27711 -23.00325 -22.83018 -21.70856 -18.63894 -18.27824 -18.07766 -17.08344 -16.57615 -16.47813 -15.77743 -15.70334 -14.90327 -14.52157 -14.38518 -14.29515 -13.22454 -12.96941 -12.89538 -12.53170 -12.43445 -12.37517 -12.22413 -11.68589 -11.44641 -11.37925 -10.82630 -10.61292 -10.16741 -10.03274 -8.24857 -6.34937 1.40890 1.42111 1.55028 1.57201 1.82202 2.40858 2.91012 2.94483 3.10071 3.74935 3.92543 4.04054 4.18326 4.32681 4.32822 4.47634 4.48621 4.61350 4.77779 4.84094 5.02936 5.25632 5.25713 5.47675 5.57920 5.77956 6.15029 6.15895 6.61458 6.78272 7.24656 7.34405 8.87083 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.107422 B = 0.004263 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 260.590637 B = 6566.860115 C = 6733.447764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.140 3.860 11 N -0.712 5.712 12 C 0.501 3.499 13 O -0.586 6.586 14 C 0.054 3.946 15 O -0.372 6.372 16 C -0.002 4.002 17 C -0.188 4.188 18 C -0.184 4.184 19 H 0.266 0.734 20 H 0.012 0.988 21 H 0.012 0.988 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.415 0.585 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.146 0.854 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 -18.441 0.014 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.015 4.015 10 C 0.017 3.983 11 N -0.364 5.364 12 C 0.288 3.712 13 O -0.466 6.466 14 C -0.025 4.025 15 O -0.291 6.291 16 C -0.059 4.059 17 C -0.226 4.226 18 C -0.221 4.221 19 H 0.075 0.925 20 H 0.030 0.970 21 H 0.030 0.970 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.252 0.748 25 H 0.133 0.867 26 H 0.132 0.868 27 H 0.163 0.837 28 H 0.101 0.899 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.586 -18.297 0.014 18.366 hybrid contribution -0.110 1.107 0.013 1.113 sum -1.696 -17.190 0.027 17.273 Atomic orbital electron populations 1.70054 1.07446 1.27961 1.51010 1.25850 0.95815 1.03019 0.94400 0.85402 0.78911 0.78826 0.77941 1.19143 1.20164 1.20158 1.21502 0.93560 0.92037 1.51539 0.92498 1.19142 0.94182 0.91489 0.96650 1.21240 0.95156 0.82183 0.99763 1.45989 1.11290 1.05093 1.74076 1.21108 0.87978 0.86439 0.75661 1.90680 1.16439 1.88304 1.51142 1.22361 0.91219 0.83138 1.05754 1.87924 1.32942 1.13602 1.94612 1.23125 0.97147 0.79526 1.06149 1.23467 1.03749 1.01246 0.94087 1.23424 1.02751 1.00253 0.95643 0.92496 0.96955 0.96974 0.93701 0.93682 0.74820 0.86683 0.86770 0.83705 0.89920 0.85558 0.85462 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.75 13.29 21.45 0.28 -53.47 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.55 -30.66 9.11 25.60 0.23 -30.43 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.14 5.09 29.85 0.15 1.29 16 10 C 0.14 6.08 5.61 86.38 0.48 6.57 16 11 N -0.71 -24.14 5.56 -463.05 -2.57 -26.72 16 12 C 0.50 17.23 7.91 87.66 0.69 17.93 16 13 O -0.59 -26.56 16.50 16.00 0.26 -26.29 16 14 C 0.05 1.24 6.29 71.24 0.45 1.68 16 15 O -0.37 -10.38 10.13 -129.94 -1.32 -11.69 16 16 C 0.00 -0.04 6.44 30.59 0.20 0.16 16 17 C -0.19 -3.10 10.48 30.59 0.32 -2.78 16 18 C -0.18 -3.03 10.48 30.59 0.32 -2.71 16 19 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 20 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 21 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 22 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.04 2.05 8.14 -2.38 -0.02 2.04 16 24 H 0.42 11.23 8.47 -92.71 -0.79 10.45 16 25 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.15 1.60 7.93 -2.39 -0.02 1.58 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -72.36 277.06 2.33 -70.03 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.33 Total: 9.88 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 3.31 Total: -7.37 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -2.29 Total: -80.19 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.05 Total: -37.99 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -72.36 2.33 -70.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716922265.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.190 kcal (2) G-P(sol) polarization free energy of solvation -72.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds