Wall clock time and date at job start Mon Mar 30 2020 02:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86797 * 120.00047 * 2 1 4 4 H 1.48492 * 109.47495 * 274.98558 * 3 2 1 5 5 H 1.48501 * 109.46986 * 34.98480 * 3 2 1 6 6 H 1.48500 * 109.47139 * 154.98095 * 3 2 1 7 7 C 1.40044 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99705 * 186.15264 * 7 2 1 9 9 C 1.46378 * 120.00360 * 6.15035 * 7 2 1 10 10 O 1.21684 * 119.99480 * 353.93537 * 9 7 2 11 11 N 1.34772 * 120.00208 * 173.94203 * 9 7 2 12 12 C 1.46501 * 120.00102 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46940 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46813 * 179.97438 * 13 12 11 15 15 O 1.42905 * 109.47168 * 179.97438 * 14 13 12 16 16 C 1.42897 * 114.00092 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.50189 * 218.62380 * 16 15 14 18 18 C 1.53002 * 60.00107 * 252.51246 * 17 16 15 19 19 H 0.97005 * 119.99906 * 359.97438 * 1 2 3 20 20 H 0.97006 * 120.00134 * 359.97438 * 11 9 7 21 21 H 1.09002 * 109.46750 * 59.99759 * 12 11 9 22 22 H 1.09001 * 109.47008 * 299.99918 * 12 11 9 23 23 H 1.09001 * 109.47346 * 299.99885 * 13 12 11 24 24 H 1.09002 * 109.47454 * 60.00364 * 13 12 11 25 25 H 1.09001 * 109.47544 * 299.99786 * 14 13 12 26 26 H 1.09002 * 109.47256 * 60.00252 * 14 13 12 27 27 H 1.09004 * 115.55189 * 4.33489 * 16 15 14 28 28 H 1.09000 * 117.49718 * 359.97438 * 17 16 15 29 29 H 1.08993 * 117.50400 * 145.02185 * 17 16 15 30 30 H 1.09003 * 117.49407 * 252.50881 * 18 17 16 31 31 H 1.09000 * 117.52254 * 107.47814 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1073 -1.3947 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4120 0.5921 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0997 9 6 1.2814 -2.4768 -0.1369 10 8 0.0646 -2.4826 -0.1388 11 7 1.9611 -3.6341 -0.2602 12 6 1.2349 -4.8992 -0.3962 13 6 2.2349 -6.0505 -0.5193 14 6 1.4765 -7.3718 -0.6606 15 8 2.4105 -8.4472 -0.7762 16 6 1.8024 -9.7330 -0.9132 17 6 2.4617 -10.9073 -0.1872 18 6 2.5649 -10.7938 -1.7095 19 1 -0.4850 0.8401 0.0004 20 1 2.9311 -3.6294 -0.2590 21 1 0.6092 -4.8648 -1.2880 22 1 0.6079 -5.0543 0.4818 23 1 2.8616 -5.8951 -1.3975 24 1 2.8610 -6.0850 0.3724 25 1 0.8501 -7.5270 0.2179 26 1 0.8502 -7.3377 -1.5520 27 1 0.7149 -9.7333 -0.9872 28 1 3.3597 -10.6992 0.3946 29 1 1.8082 -11.6804 0.2167 30 1 1.9790 -11.4923 -2.3070 31 1 3.5302 -10.5108 -2.1293 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717361198.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:54 Heat of formation + Delta-G solvation = -68.526312 kcal Electronic energy + Delta-G solvation = -13424.333365 eV Core-core repulsion = 10899.497159 eV Total energy + Delta-G solvation = -2524.836206 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.67418 -37.34767 -35.51549 -33.80435 -32.37759 -30.55273 -26.60883 -24.43879 -22.59669 -22.11462 -21.22323 -19.66237 -17.24603 -17.07093 -15.82516 -15.43594 -15.17515 -14.63342 -13.98329 -13.93743 -13.72724 -12.63929 -12.33506 -12.30994 -11.74421 -11.44232 -11.36104 -11.10431 -10.98615 -10.97639 -10.62947 -10.49144 -10.40721 -10.19727 -9.21060 -8.83274 -7.60603 -7.49281 -6.18053 -4.61995 3.15447 3.22294 3.25971 3.34620 3.65524 4.12899 4.60247 4.61914 4.75543 4.78154 5.10920 5.13175 5.19847 5.41742 5.42630 5.51930 5.70264 5.73390 5.78188 5.91753 5.92805 6.08692 6.57756 6.58112 7.17370 7.45487 7.95134 8.11321 8.35243 9.04182 9.55308 10.61379 10.79797 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.102340 B = 0.004251 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.532776 B = 6584.871873 C = 6762.252624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.768 5.768 12 C 0.136 3.864 13 C -0.127 4.127 14 C 0.067 3.933 15 O -0.358 6.358 16 C 0.019 3.981 17 C -0.192 4.192 18 C -0.187 4.187 19 H 0.268 0.732 20 H 0.381 0.619 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.771 -15.673 -1.713 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.087 0.913 9 C 0.358 3.642 10 O -0.465 6.465 11 N -0.424 5.424 12 C 0.011 3.989 13 C -0.165 4.165 14 C -0.009 4.009 15 O -0.277 6.277 16 C -0.040 4.040 17 C -0.229 4.229 18 C -0.224 4.224 19 H 0.079 0.921 20 H 0.213 0.787 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.128 0.872 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.872 -15.534 -1.704 16.099 hybrid contribution 0.685 0.682 -0.025 0.966 sum 4.556 -14.852 -1.729 15.631 Atomic orbital electron populations 1.70037 1.07098 1.27235 1.35363 1.25718 0.94609 1.00332 0.92605 0.86345 0.80222 0.81437 0.78656 1.19811 1.20473 1.18880 1.20895 0.94135 0.89591 1.53731 0.91345 1.18236 0.87152 0.82411 0.76407 1.90591 1.14125 1.86480 1.55344 1.46111 1.08657 1.05665 1.81927 1.20705 0.93768 0.83844 1.00595 1.21710 0.99244 0.92232 1.03315 1.22520 0.91733 0.86185 1.00489 1.87818 1.33124 1.13484 1.93239 1.22642 0.95487 0.81455 1.04376 1.23380 1.03973 1.00463 0.95081 1.23330 1.03173 1.01526 0.94345 0.92136 0.78749 0.93286 0.93287 0.90894 0.90916 0.92794 0.92803 0.87228 0.88209 0.88351 0.88285 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.35 11.85 55.55 0.66 -22.69 16 2 C 0.09 2.46 5.49 -17.37 -0.10 2.37 16 3 Si 0.91 20.33 29.56 -169.99 -5.03 15.30 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.55 -15.70 9.53 -35.63 -0.34 -16.04 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 9 C 0.55 16.13 7.74 -12.99 -0.10 16.03 16 10 O -0.58 -19.25 15.04 5.20 0.08 -19.17 16 11 N -0.77 -17.58 5.55 -61.72 -0.34 -17.93 16 12 C 0.14 2.64 5.67 -4.04 -0.02 2.62 16 13 C -0.13 -1.89 5.70 -26.73 -0.15 -2.04 16 14 C 0.07 0.89 5.81 37.16 0.22 1.10 16 15 O -0.36 -4.85 10.60 -35.23 -0.37 -5.22 16 16 C 0.02 0.20 6.44 -26.73 -0.17 0.03 16 17 C -0.19 -1.74 10.48 -26.73 -0.28 -2.02 16 18 C -0.19 -1.69 10.48 -26.73 -0.28 -1.97 16 19 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 20 H 0.38 7.64 8.45 -40.82 -0.35 7.30 16 21 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.11 0.99 7.93 -51.93 -0.41 0.58 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 275.23 15.07 4.15 4.15 Total: -1.00 -34.64 275.23 -6.62 -41.25 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.53 Total: 4.24 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.23 Total: 0.07 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.32 Total: -40.62 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.30 Total: -24.39 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.64 -6.62 -41.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717361198.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.272 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds