Wall clock time and date at job start Mon Mar 30 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86797 * 120.00047 * 2 1 4 4 H 1.48492 * 109.47495 * 274.98558 * 3 2 1 5 5 H 1.48501 * 109.46986 * 34.98480 * 3 2 1 6 6 H 1.48500 * 109.47139 * 154.98095 * 3 2 1 7 7 C 1.40044 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99705 * 186.15264 * 7 2 1 9 9 C 1.46378 * 120.00360 * 6.15035 * 7 2 1 10 10 O 1.21684 * 119.99480 * 353.93537 * 9 7 2 11 11 N 1.34772 * 120.00208 * 173.94203 * 9 7 2 12 12 C 1.46501 * 120.00102 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46940 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46813 * 179.97438 * 13 12 11 15 15 O 1.42905 * 109.47168 * 179.97438 * 14 13 12 16 16 C 1.42897 * 114.00092 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.50189 * 218.62380 * 16 15 14 18 18 C 1.53002 * 60.00107 * 252.51246 * 17 16 15 19 19 H 0.97005 * 119.99906 * 359.97438 * 1 2 3 20 20 H 0.97006 * 120.00134 * 359.97438 * 11 9 7 21 21 H 1.09002 * 109.46750 * 59.99759 * 12 11 9 22 22 H 1.09001 * 109.47008 * 299.99918 * 12 11 9 23 23 H 1.09001 * 109.47346 * 299.99885 * 13 12 11 24 24 H 1.09002 * 109.47454 * 60.00364 * 13 12 11 25 25 H 1.09001 * 109.47544 * 299.99786 * 14 13 12 26 26 H 1.09002 * 109.47256 * 60.00252 * 14 13 12 27 27 H 1.09004 * 115.55189 * 4.33489 * 16 15 14 28 28 H 1.09000 * 117.49718 * 359.97438 * 17 16 15 29 29 H 1.08993 * 117.50400 * 145.02185 * 17 16 15 30 30 H 1.09003 * 117.49407 * 252.50881 * 18 17 16 31 31 H 1.09000 * 117.52254 * 107.47814 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1073 -1.3947 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4120 0.5921 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0997 9 6 1.2814 -2.4768 -0.1369 10 8 0.0646 -2.4826 -0.1388 11 7 1.9611 -3.6341 -0.2602 12 6 1.2349 -4.8992 -0.3962 13 6 2.2349 -6.0505 -0.5193 14 6 1.4765 -7.3718 -0.6606 15 8 2.4105 -8.4472 -0.7762 16 6 1.8024 -9.7330 -0.9132 17 6 2.4617 -10.9073 -0.1872 18 6 2.5649 -10.7938 -1.7095 19 1 -0.4850 0.8401 0.0004 20 1 2.9311 -3.6294 -0.2590 21 1 0.6092 -4.8648 -1.2880 22 1 0.6079 -5.0543 0.4818 23 1 2.8616 -5.8951 -1.3975 24 1 2.8610 -6.0850 0.3724 25 1 0.8501 -7.5270 0.2179 26 1 0.8502 -7.3377 -1.5520 27 1 0.7149 -9.7333 -0.9872 28 1 3.3597 -10.6992 0.3946 29 1 1.8082 -11.6804 0.2167 30 1 1.9790 -11.4923 -2.3070 31 1 3.5302 -10.5108 -2.1293 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717361198.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:53 Heat of formation + Delta-G solvation = -94.117145 kcal Electronic energy + Delta-G solvation = -13425.443067 eV Core-core repulsion = 10899.497159 eV Total energy + Delta-G solvation = -2525.945908 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.70676 -39.28658 -36.66533 -35.38101 -34.52410 -32.17675 -28.62936 -25.99588 -23.28406 -23.00047 -22.52350 -21.72529 -19.16301 -18.13196 -17.44415 -17.00066 -16.34279 -16.05983 -15.79904 -15.43650 -14.90089 -14.27962 -14.09396 -13.64152 -13.07341 -12.90385 -12.75262 -12.60542 -12.54658 -12.40350 -12.15633 -11.99304 -11.74169 -11.36577 -10.93361 -10.07610 -9.89788 -9.51163 -8.30873 -6.86206 1.41231 1.42455 1.58735 2.23464 2.39518 2.46259 2.92276 3.21916 3.59362 3.88787 3.95437 4.07032 4.08987 4.09864 4.38894 4.49821 4.55182 4.65404 4.73426 4.76117 5.01343 5.13743 5.14960 5.24006 5.32226 5.86950 6.19409 6.24759 6.29115 6.86065 7.53054 8.47155 8.66019 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.102340 B = 0.004251 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.532776 B = 6584.871873 C = 6762.252624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.027 3.973 3 Si 1.002 2.998 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.535 3.465 10 O -0.634 6.634 11 N -0.757 5.757 12 C 0.138 3.862 13 C -0.111 4.111 14 C 0.072 3.928 15 O -0.377 6.377 16 C -0.007 4.007 17 C -0.187 4.187 18 C -0.181 4.181 19 H 0.275 0.725 20 H 0.397 0.603 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.124 0.876 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.289 -15.964 -1.858 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.612 4.612 8 H 0.107 0.893 9 C 0.339 3.661 10 O -0.522 6.522 11 N -0.411 5.411 12 C 0.013 3.987 13 C -0.148 4.148 14 C -0.004 4.004 15 O -0.297 6.297 16 C -0.065 4.065 17 C -0.224 4.224 18 C -0.218 4.218 19 H 0.085 0.915 20 H 0.230 0.770 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.142 0.858 28 H 0.110 0.890 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.440 -15.885 -1.851 16.892 hybrid contribution 0.210 0.658 0.019 0.691 sum 5.651 -15.227 -1.832 16.345 Atomic orbital electron populations 1.70198 1.09608 1.29030 1.36330 1.27025 0.95553 1.05097 0.91148 0.84953 0.78874 0.74919 0.79186 1.18753 1.19709 1.17106 1.21452 0.95310 0.90262 1.54136 0.89304 1.18658 0.86819 0.84345 0.76236 1.90543 1.16233 1.87625 1.57750 1.45802 1.09460 1.05573 1.80308 1.20776 0.94558 0.83886 0.99463 1.21491 0.98072 0.91430 1.03850 1.22384 0.91422 0.85441 1.01188 1.87760 1.33776 1.14549 1.93571 1.22982 0.96520 0.80583 1.06376 1.23462 1.03767 0.99954 0.95184 1.23422 1.02835 1.00870 0.94637 0.91498 0.76953 0.94481 0.94447 0.90304 0.90324 0.92159 0.92124 0.85800 0.88980 0.86314 0.86183 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.92 11.85 21.84 0.26 -50.66 16 2 C 0.03 1.51 5.49 85.30 0.47 1.98 16 3 Si 1.00 41.19 29.56 68.60 2.03 43.21 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.58 -33.09 9.53 24.83 0.24 -32.85 16 8 H 0.09 4.57 7.85 -2.91 -0.02 4.54 16 9 C 0.54 31.78 7.74 86.36 0.67 32.45 16 10 O -0.63 -43.39 15.04 -4.30 -0.06 -43.45 16 11 N -0.76 -34.80 5.55 -467.41 -2.59 -37.40 16 12 C 0.14 5.38 5.67 86.38 0.49 5.87 16 13 C -0.11 -3.17 5.70 30.59 0.17 -3.00 16 14 C 0.07 1.82 5.81 71.98 0.42 2.24 16 15 O -0.38 -9.72 10.60 -148.98 -1.58 -11.29 16 16 C -0.01 -0.14 6.44 30.59 0.20 0.06 16 17 C -0.19 -3.03 10.48 30.59 0.32 -2.71 16 18 C -0.18 -2.91 10.48 30.60 0.32 -2.59 16 19 H 0.28 15.35 8.29 -92.70 -0.77 14.58 16 20 H 0.40 15.62 8.45 -92.70 -0.78 14.84 16 21 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.12 2.01 7.93 -2.38 -0.02 1.99 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 29 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -76.09 275.23 1.68 -74.41 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.33 Total: 23.73 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 3.29 Total: 1.45 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -2.34 Total: -88.06 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -1.64 Total: -54.75 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -76.09 1.68 -74.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717361198.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.706 kcal (2) G-P(sol) polarization free energy of solvation -76.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds