Wall clock time and date at job start Mon Mar 30 2020 02:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99827 * 2 1 4 4 H 1.48494 * 109.47337 * 240.00190 * 3 2 1 5 5 H 1.48503 * 109.46979 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46942 * 120.00263 * 3 2 1 7 7 C 1.37874 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99705 * 178.57590 * 7 2 1 9 9 C 1.50697 * 120.00219 * 358.57149 * 7 2 1 10 10 C 1.53005 * 115.54564 * 84.95566 * 9 7 2 11 11 O 1.42899 * 109.47257 * 39.89515 * 10 9 7 12 12 C 1.42898 * 113.99800 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.40023 * 332.44090 * 12 11 10 14 14 C 1.54310 * 110.44546 * 209.99674 * 12 11 10 15 15 N 1.48215 * 105.14782 * 241.88024 * 14 12 11 16 16 O 1.47890 * 105.30826 * 335.81572 * 15 14 12 17 17 C 1.44616 * 104.69774 * 40.30722 * 16 15 14 18 18 C 1.52996 * 117.52056 * 230.65405 * 9 7 2 19 19 C 1.52995 * 117.49789 * 299.28731 * 9 7 2 20 20 H 0.97002 * 119.99987 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47009 * 279.88987 * 10 9 7 22 22 H 1.09000 * 109.46927 * 159.89683 * 10 9 7 23 23 H 1.08998 * 110.31930 * 0.83219 * 14 12 11 24 24 H 1.08996 * 110.32010 * 122.93421 * 14 12 11 25 25 H 1.00900 * 110.99888 * 95.99774 * 15 14 12 26 26 H 1.08999 * 110.52993 * 202.40033 * 17 16 15 27 27 H 1.09009 * 110.64848 * 79.70320 * 17 16 15 28 28 H 1.08997 * 117.50002 * 214.96701 * 18 9 7 29 29 H 1.09002 * 117.50085 * 359.97438 * 18 9 7 30 30 H 1.08998 * 117.50326 * 359.97438 * 19 9 7 31 31 H 1.09010 * 117.49542 * 144.99713 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0843 -1.1941 -0.0238 9 6 1.2514 -2.4989 0.0314 10 6 0.7869 -3.0261 -1.3278 11 8 1.8085 -2.7997 -2.3010 12 6 1.4739 -3.2584 -3.6123 13 1 0.7700 -4.0888 -3.5563 14 6 2.7461 -3.6807 -4.3767 15 7 2.8137 -2.7738 -5.5470 16 8 1.4219 -2.3309 -5.7787 17 6 0.8832 -2.1063 -4.4555 18 6 1.6657 -3.5286 1.0845 19 6 0.3491 -2.7644 1.2381 20 1 -0.4850 0.8401 0.0004 21 1 -0.1225 -2.5056 -1.6278 22 1 0.5861 -4.0949 -1.2536 23 1 3.6263 -3.5522 -3.7467 24 1 2.6641 -4.7168 -4.7048 25 1 3.4170 -1.9868 -5.3603 26 1 -0.2052 -2.1630 -4.4712 27 1 1.2092 -1.1417 -4.0664 28 1 1.6072 -4.5816 0.8091 29 1 2.4835 -3.2625 1.7542 30 1 0.3005 -1.9955 2.0091 31 1 -0.5755 -3.3148 1.0637 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722476797.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:22 Heat of formation + Delta-G solvation = -32.367751 kcal Electronic energy + Delta-G solvation = -14647.252654 eV Core-core repulsion = 12123.984401 eV Total energy + Delta-G solvation = -2523.268253 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.31639 -38.72530 -37.01257 -33.96875 -32.90834 -30.46950 -27.95349 -26.95662 -25.23781 -22.93335 -22.29182 -21.11034 -18.62271 -18.10443 -17.28187 -16.83422 -16.57475 -16.26153 -15.86753 -15.57793 -14.67264 -14.33826 -14.09666 -13.63823 -13.28848 -13.00500 -12.87231 -12.81837 -12.39164 -12.08510 -12.03115 -11.57132 -11.33277 -10.90495 -10.56059 -10.47715 -10.38367 -9.88175 -8.09777 -6.17654 1.39910 1.40541 1.47353 1.97675 2.42123 2.68982 3.20570 3.32030 3.48433 3.59734 3.85916 4.00520 4.29660 4.32509 4.48152 4.51137 4.59404 4.63561 4.73124 4.79854 4.94632 5.02277 5.23385 5.33821 5.53322 5.63040 5.77250 5.78406 6.32342 6.55175 6.85353 7.48733 8.98705 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.010851 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.315016 B = 2579.810729 C = 3202.088012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.026 3.974 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.488 4.488 8 H 0.045 0.955 9 C 0.006 3.994 10 C 0.118 3.882 11 O -0.369 6.369 12 C 0.037 3.963 13 H 0.092 0.908 14 C 0.017 3.983 15 N -0.477 5.477 16 O -0.236 6.236 17 C -0.007 4.007 18 C -0.187 4.187 19 C -0.153 4.153 20 H 0.258 0.742 21 H 0.026 0.974 22 H 0.047 0.953 23 H 0.098 0.902 24 H 0.125 0.875 25 H 0.349 0.651 26 H 0.109 0.891 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.336 -6.605 -5.436 8.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.173 4.173 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.006 3.994 10 C 0.041 3.959 11 O -0.287 6.287 12 C -0.024 4.024 13 H 0.110 0.890 14 C -0.113 4.113 15 N -0.144 5.144 16 O -0.246 6.246 17 C -0.086 4.086 18 C -0.224 4.224 19 C -0.190 4.190 20 H 0.067 0.933 21 H 0.044 0.956 22 H 0.065 0.935 23 H 0.117 0.883 24 H 0.143 0.857 25 H 0.163 0.837 26 H 0.127 0.873 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.281 -6.874 -6.148 9.501 hybrid contribution -0.137 1.760 1.139 2.101 sum 2.144 -5.114 -5.010 7.473 Atomic orbital electron populations 1.70071 1.06734 1.26827 1.51133 1.25541 0.95545 1.01445 0.94780 0.85870 0.78611 0.80039 0.78636 1.20142 1.21105 1.19811 1.20456 0.91937 0.90000 1.50175 0.93703 1.18933 0.99689 0.94215 0.86576 1.21967 0.88989 0.96226 0.88696 1.88090 1.41851 1.82233 1.16530 1.24220 0.97352 0.95802 0.84983 0.89037 1.23673 0.98212 0.99403 0.90044 1.69049 0.91882 1.15219 1.38210 1.92121 1.19912 1.89432 1.23132 1.24371 1.01076 0.98684 0.84454 1.23096 0.97991 0.96544 1.04736 1.22420 0.92973 1.01442 1.02181 0.93341 0.95558 0.93456 0.88327 0.85729 0.83680 0.87279 0.92832 0.88628 0.90602 0.92074 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.18 12.80 21.45 0.27 -50.91 16 2 C 0.03 1.44 5.41 84.65 0.46 1.90 16 3 Si 0.94 43.65 29.54 68.60 2.03 45.68 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.49 -26.48 8.24 25.60 0.21 -26.27 16 8 H 0.04 2.49 7.81 -2.91 -0.02 2.46 16 9 C 0.01 0.30 1.81 -52.93 -0.10 0.20 16 10 C 0.12 5.01 5.84 71.98 0.42 5.43 16 11 O -0.37 -15.11 9.36 -148.98 -1.39 -16.51 16 12 C 0.04 1.18 3.58 31.55 0.11 1.29 16 13 H 0.09 2.55 7.81 -2.39 -0.02 2.54 16 14 C 0.02 0.44 7.63 86.49 0.66 1.10 16 15 N -0.48 -13.51 8.44 -182.22 -1.54 -15.05 16 16 O -0.24 -7.81 12.76 -54.42 -0.69 -8.51 16 17 C -0.01 -0.22 7.66 72.49 0.56 0.34 16 18 C -0.19 -7.65 9.88 30.59 0.30 -7.35 16 19 C -0.15 -6.89 9.33 30.59 0.29 -6.60 16 20 H 0.26 14.02 8.31 -92.71 -0.77 13.24 16 21 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.05 1.72 7.91 -2.39 -0.02 1.70 16 23 H 0.10 2.56 7.99 -2.39 -0.02 2.54 16 24 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.35 9.12 9.09 -89.69 -0.82 8.30 16 26 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 27 H 0.05 2.05 8.09 -2.38 -0.02 2.03 16 28 H 0.10 3.32 8.08 -2.39 -0.02 3.30 16 29 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 30 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 Total: -1.00 -60.38 267.54 1.88 -58.49 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.30 Total: 16.76 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 2.91 Total: -29.97 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -1.26 Total: -65.95 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -2.09 Total: -25.01 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -60.38 1.88 -58.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722476797.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.125 kcal (2) G-P(sol) polarization free energy of solvation -60.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds