Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46174 * 300.02179 * 10 9 7 12 12 O 1.20820 * 119.99873 * 265.00184 * 11 10 9 13 13 O 1.34232 * 119.99925 * 84.99871 * 11 10 9 14 14 C 1.53032 * 109.46296 * 180.02562 * 10 9 7 15 15 C 1.53117 * 109.28185 * 299.16239 * 14 10 9 16 16 C 1.53120 * 109.15851 * 302.34804 * 15 14 10 17 17 C 1.53037 * 109.28038 * 57.65252 * 16 15 14 18 18 N 1.46845 * 109.46205 * 59.99730 * 10 9 7 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 0.96697 * 116.99684 * 180.02562 * 13 11 10 23 23 H 1.09004 * 109.50638 * 59.10631 * 14 10 9 24 24 H 1.09007 * 109.50559 * 179.21920 * 14 10 9 25 25 H 1.08999 * 109.52621 * 182.44367 * 15 14 10 26 26 H 1.08994 * 109.52344 * 62.24610 * 15 14 10 27 27 H 1.09002 * 109.50673 * 297.70748 * 16 15 14 28 28 H 1.09008 * 109.50304 * 177.59213 * 16 15 14 29 29 H 1.08997 * 109.46114 * 180.80465 * 17 16 15 30 30 H 1.09000 * 109.45973 * 60.83836 * 17 16 15 31 31 H 1.00899 * 111.00330 * 294.17743 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 3.1119 -3.5818 -1.2308 12 8 2.8176 -4.2113 -2.2192 13 8 4.2108 -2.8109 -1.2285 14 6 1.4799 -4.9873 -0.0012 15 6 0.6167 -5.0732 1.2606 16 6 1.5147 -4.9405 2.4937 17 6 2.2790 -3.6167 2.4221 18 7 3.0894 -3.5841 1.1985 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 4.7348 -2.7912 -2.0409 23 1 0.8413 -5.0383 -0.8831 24 1 2.1875 -5.8163 -0.0152 25 1 0.1030 -6.0342 1.2858 26 1 -0.1168 -4.2670 1.2558 27 1 2.2228 -5.7687 2.5191 28 1 0.9009 -4.9581 3.3944 29 1 2.9300 -3.5257 3.2915 30 1 1.5705 -2.7884 2.4108 31 1 3.6755 -2.7631 1.1754 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722716013.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = -107.413933 kcal Electronic energy + Delta-G solvation = -15248.060548 eV Core-core repulsion = 12721.538048 eV Total energy + Delta-G solvation = -2526.522500 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.02704 -37.83108 -35.37914 -33.17314 -31.62528 -30.93674 -27.45937 -24.31542 -23.24752 -22.53502 -20.58799 -18.03974 -17.27544 -16.93575 -16.02395 -15.12180 -14.74659 -14.28558 -13.81972 -13.51155 -12.85743 -12.60054 -12.45140 -12.18929 -11.95768 -11.51056 -11.17090 -10.91363 -10.76310 -10.56276 -10.43013 -10.08378 -9.90573 -9.79500 -9.51078 -9.13109 -8.47925 -7.66101 -6.12729 -4.16728 3.04870 3.25430 3.32611 3.36388 3.84154 4.36313 4.89271 5.23759 5.28491 5.42211 5.52635 5.75862 5.97002 6.03826 6.16064 6.29486 6.37077 6.42461 6.49187 6.58061 6.69028 6.86593 7.19060 7.29822 7.46553 7.70058 7.83417 8.07993 8.21123 8.70061 8.90966 9.49143 10.98153 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.012882 C = 0.010869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.196378 B = 2173.006963 C = 2575.542459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.272 1.272 6 H -0.287 1.287 7 C -0.532 4.532 8 H 0.071 0.929 9 C 0.001 3.999 10 C 0.127 3.873 11 C 0.517 3.483 12 O -0.542 6.542 13 O -0.502 6.502 14 C -0.094 4.094 15 C -0.120 4.120 16 C -0.115 4.115 17 C 0.054 3.946 18 N -0.671 5.671 19 H 0.262 0.738 20 H 0.045 0.955 21 H 0.024 0.976 22 H 0.393 0.607 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 -6.472 3.177 8.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.197 1.197 6 H -0.213 1.213 7 C -0.570 4.570 8 H 0.089 0.911 9 C -0.037 4.037 10 C 0.035 3.965 11 C 0.361 3.639 12 O -0.431 6.431 13 O -0.311 6.311 14 C -0.132 4.132 15 C -0.158 4.158 16 C -0.152 4.152 17 C -0.076 4.076 18 N -0.305 5.305 19 H 0.072 0.928 20 H 0.063 0.937 21 H 0.042 0.958 22 H 0.250 0.750 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.905 -7.202 3.281 8.825 hybrid contribution 0.322 1.977 -0.665 2.110 sum 4.227 -5.225 2.616 7.212 Atomic orbital electron populations 1.69966 1.06131 1.26880 1.49941 1.24988 0.94777 0.99336 0.94877 0.86565 0.79943 0.83223 0.78152 1.20602 1.19665 1.21319 1.21309 0.93607 0.90396 1.51715 0.91126 1.19808 0.93908 0.90786 0.99177 1.20949 0.91605 0.98261 0.85698 1.23348 0.77986 0.72983 0.89560 1.90602 1.71301 1.44981 1.36235 1.84644 1.37623 1.64632 1.44189 1.21449 0.98196 0.95205 0.98355 1.21607 0.98144 1.01603 0.94412 1.21578 0.98127 0.98137 0.97401 1.21882 0.96522 0.97216 0.91966 1.60762 1.22222 1.47033 1.00520 0.92843 0.93688 0.95785 0.75027 0.91060 0.92069 0.92335 0.91003 0.92000 0.92223 0.91655 0.92753 0.82427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.53 -14.01 7.93 -34.44 -0.27 -14.28 16 8 H 0.07 1.81 5.38 -52.49 -0.28 1.53 16 9 C 0.00 0.03 3.29 -27.89 -0.09 -0.06 16 10 C 0.13 2.64 0.65 -132.77 -0.09 2.56 16 11 C 0.52 11.02 6.66 36.01 0.24 11.26 16 12 O -0.54 -12.38 16.87 -18.75 -0.32 -12.70 16 13 O -0.50 -9.33 11.15 -39.26 -0.44 -9.77 16 14 C -0.09 -1.75 4.41 -26.65 -0.12 -1.87 16 15 C -0.12 -1.96 5.70 -26.61 -0.15 -2.11 16 16 C -0.11 -1.73 6.09 -26.65 -0.16 -1.90 16 17 C 0.05 0.92 6.25 -3.86 -0.02 0.90 16 18 N -0.67 -12.69 6.16 -101.21 -0.62 -13.31 16 19 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 20 H 0.05 1.14 4.80 -51.92 -0.25 0.89 16 21 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.39 5.37 9.10 45.56 0.41 5.78 16 23 H 0.07 1.38 7.90 -51.93 -0.41 0.97 16 24 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.29 6.56 -51.93 -0.34 0.95 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 1.08 6.19 -51.93 -0.32 0.76 16 31 H 0.36 7.00 6.75 -39.29 -0.27 6.74 16 LS Contribution 248.59 15.07 3.75 3.75 Total: -1.00 -30.30 248.59 -5.80 -36.10 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -3.13 Total: 8.79 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.76 Total: -3.89 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.11 Total: -38.31 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.75 Total: -22.46 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.30 -5.80 -36.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722716013.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.311 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds