Wall clock time and date at job start Mon Mar 30 2020 02:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00269 * 2 1 4 4 H 1.48501 * 109.46725 * 89.77863 * 3 2 1 5 5 H 1.48498 * 109.47254 * 209.78153 * 3 2 1 6 6 H 1.48501 * 109.47142 * 329.78527 * 3 2 1 7 7 C 1.37876 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00316 * 23.18090 * 7 2 1 9 9 C 1.50704 * 119.99718 * 203.17494 * 7 2 1 10 10 C 1.50699 * 108.95906 * 54.80175 * 9 7 2 11 11 O 1.20834 * 119.99847 * 94.99683 * 10 9 7 12 12 O 1.34229 * 120.00193 * 274.99421 * 10 9 7 13 13 C 1.54068 * 108.97716 * 173.60327 * 9 7 2 14 14 C 1.54295 * 112.28831 * 79.56215 * 13 9 7 15 15 C 1.50460 * 113.03383 * 318.30102 * 14 13 9 16 16 C 1.54508 * 108.84794 * 92.15687 * 15 14 13 17 17 C 1.45872 * 111.59276 * 282.80575 * 16 15 14 18 18 N 1.44266 * 108.98362 * 296.07434 * 9 7 2 19 19 H 0.97006 * 119.99736 * 359.97438 * 1 2 3 20 20 H 0.96697 * 117.00187 * 180.02562 * 12 10 9 21 21 H 1.08997 * 108.92147 * 200.28412 * 13 9 7 22 22 H 1.08999 * 108.92262 * 318.83707 * 13 9 7 23 23 H 1.09002 * 108.76786 * 79.21666 * 14 13 9 24 24 H 1.08998 * 108.76978 * 197.49922 * 14 13 9 25 25 H 1.08992 * 109.57657 * 211.96539 * 15 14 13 26 26 H 1.09001 * 109.57578 * 332.34677 * 15 14 13 27 27 H 1.08996 * 109.05560 * 43.34510 * 16 15 14 28 28 H 1.09000 * 109.05944 * 162.33006 * 16 15 14 29 29 H 1.08993 * 108.79336 * 182.21564 * 17 16 15 30 30 H 1.09000 * 108.78703 * 300.55046 * 17 16 15 31 31 H 1.00903 * 110.99806 * 98.66495 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4921 2.0490 1.4001 5 1 3.5491 1.4388 -0.6954 6 1 1.4490 2.6513 -0.7046 7 6 2.0045 -1.1941 -0.0005 8 1 1.5299 -2.0915 -0.3691 9 6 3.4203 -1.2470 0.5131 10 6 3.4547 -0.6889 1.9125 11 8 3.3832 -1.4333 2.8617 12 8 3.5647 0.6350 2.1046 13 6 3.8863 -2.7151 0.5475 14 6 4.3142 -3.2261 -0.8441 15 6 3.3942 -2.7743 -1.9456 16 6 3.9348 -1.4533 -2.5371 17 6 3.6386 -0.3168 -1.6719 18 7 4.2579 -0.4344 -0.3351 19 1 -0.4850 0.8401 0.0004 20 1 3.5829 0.9457 3.0201 21 1 4.7309 -2.8019 1.2309 22 1 3.0702 -3.3364 0.9165 23 1 5.3201 -2.8639 -1.0565 24 1 4.3306 -4.3158 -0.8278 25 1 3.3568 -3.5351 -2.7251 26 1 2.3944 -2.6120 -1.5428 27 1 5.0147 -1.5343 -2.6608 28 1 3.4767 -1.2860 -3.5119 29 1 4.0035 0.5925 -2.1493 30 1 2.5580 -0.2399 -1.5511 31 1 4.4118 0.4753 0.0734 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722757914.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:40 Heat of formation + Delta-G solvation = -62.530957 kcal Electronic energy + Delta-G solvation = -15924.600242 eV Core-core repulsion = 13400.024014 eV Total energy + Delta-G solvation = -2524.576228 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.79652 -39.59102 -37.13338 -35.01218 -33.88669 -33.32146 -28.39133 -26.46366 -26.01856 -23.29764 -21.04767 -20.25232 -19.33451 -18.87273 -18.23639 -17.00348 -16.63655 -15.73465 -15.45329 -15.33855 -14.82355 -14.29270 -14.01565 -13.86881 -13.28707 -13.10443 -12.87450 -12.61410 -12.28435 -11.74015 -11.42463 -11.34194 -11.17364 -11.07528 -10.96097 -10.59956 -10.30733 -8.98990 -8.48324 -6.43908 1.30368 1.40060 1.49324 1.52396 2.29051 2.41795 2.92564 3.63970 4.10257 4.22188 4.41704 4.52251 4.63886 4.73642 4.92438 5.01525 5.10468 5.15554 5.33635 5.40748 5.50041 5.54837 5.64498 5.67797 5.72235 5.90986 5.99107 6.40191 6.53829 6.72069 7.05460 7.16480 8.59671 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.027711 B = 0.020383 C = 0.015975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.183159 B = 1373.357127 C = 1752.348310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.029 3.971 3 Si 0.902 3.098 4 H -0.230 1.230 5 H -0.201 1.201 6 H -0.321 1.321 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.223 3.777 10 C 0.467 3.533 11 O -0.564 6.564 12 O -0.509 6.509 13 C -0.072 4.072 14 C -0.088 4.088 15 C -0.133 4.133 16 C -0.092 4.092 17 C 0.026 3.974 18 N -0.673 5.673 19 H 0.270 0.730 20 H 0.410 0.590 21 H 0.048 0.952 22 H 0.038 0.962 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.892 1.449 -2.532 9.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.174 4.174 3 Si 0.730 3.270 4 H -0.156 1.156 5 H -0.124 1.124 6 H -0.251 1.251 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.131 3.869 10 C 0.312 3.688 11 O -0.455 6.455 12 O -0.324 6.324 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.170 4.170 16 C -0.130 4.130 17 C -0.101 4.101 18 N -0.311 5.311 19 H 0.079 0.921 20 H 0.273 0.727 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.145 0.674 -2.827 9.596 hybrid contribution -1.243 1.477 1.128 2.235 sum 7.902 2.151 -1.699 8.364 Atomic orbital electron populations 1.70197 1.08674 1.28866 1.46293 1.26117 0.95324 1.03511 0.92452 0.87222 0.80730 0.78307 0.80789 1.15595 1.12399 1.25113 1.21137 0.96702 0.96324 1.43101 0.91861 1.18595 0.92453 0.93220 0.82615 1.25381 0.68990 0.80090 0.94302 1.90527 1.48863 1.60791 1.45293 1.85051 1.84975 1.24884 1.37505 1.21584 0.98778 0.92579 0.98135 1.21009 0.99676 0.98973 0.92854 1.21605 1.01182 0.96779 0.97410 1.20370 1.00544 0.94631 0.97424 1.21257 1.01990 0.97899 0.88955 1.61015 1.47639 1.18619 1.03847 0.92097 0.72728 0.93342 0.94284 0.91484 0.92201 0.91963 0.91457 0.91863 0.91909 0.92612 0.91069 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.52 13.96 21.45 0.30 -52.22 16 2 C 0.03 1.55 4.44 84.65 0.38 1.93 16 3 Si 0.90 38.83 21.75 68.60 1.49 40.33 16 4 H -0.23 -9.22 5.38 99.48 0.53 -8.68 16 5 H -0.20 -7.62 3.01 99.48 0.30 -7.32 16 6 H -0.32 -14.61 7.11 99.48 0.71 -13.90 16 7 C -0.54 -27.75 5.22 25.60 0.13 -27.62 16 8 H 0.06 3.65 6.00 -2.91 -0.02 3.63 16 9 C 0.22 9.97 0.64 2.89 0.00 9.97 16 10 C 0.47 21.07 6.49 71.24 0.46 21.53 16 11 O -0.56 -27.86 16.84 21.94 0.37 -27.49 16 12 O -0.51 -19.05 7.10 -51.41 -0.36 -19.42 16 13 C -0.07 -3.01 4.52 31.39 0.14 -2.87 16 14 C -0.09 -3.06 5.42 30.21 0.16 -2.89 16 15 C -0.13 -4.76 5.60 30.29 0.17 -4.59 16 16 C -0.09 -3.12 5.53 28.92 0.16 -2.96 16 17 C 0.03 1.02 3.53 83.95 0.30 1.32 16 18 N -0.67 -26.77 5.95 -490.74 -2.92 -29.69 16 19 H 0.27 14.80 8.31 -92.70 -0.77 14.03 16 20 H 0.41 11.41 9.10 -74.06 -0.67 10.74 16 21 H 0.05 1.95 7.79 -2.39 -0.02 1.93 16 22 H 0.04 1.76 7.97 -2.39 -0.02 1.74 16 23 H 0.07 2.20 7.38 -2.39 -0.02 2.18 16 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.07 2.95 4.32 -2.39 -0.01 2.94 16 27 H 0.06 1.94 7.59 -2.39 -0.02 1.92 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.95 7.19 -2.39 -0.02 1.94 16 30 H 0.07 3.25 3.16 -2.39 -0.01 3.24 16 31 H 0.34 12.97 4.42 -89.69 -0.40 12.58 16 Total: -1.00 -62.39 220.14 0.30 -62.10 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.48 Total: 32.57 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 1.91 Total: -6.18 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -2.62 Total: -81.91 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: 0.00 Total: -46.91 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.49 Total: 40.33 kcal Total: -62.39 0.30 -62.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722757914.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.436 kcal (2) G-P(sol) polarization free energy of solvation -62.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds