Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99832 * 2 1 4 4 H 1.48499 * 109.47118 * 240.00250 * 3 2 1 5 5 H 1.48498 * 109.46967 * 120.00274 * 3 2 1 6 6 H 1.48497 * 109.47177 * 0.02562 * 3 2 1 7 7 C 1.37871 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00247 * 187.40573 * 7 2 1 9 9 C 1.50704 * 119.99971 * 7.41264 * 7 2 1 10 10 C 1.50699 * 108.78402 * 56.33862 * 9 7 2 11 11 O 1.20823 * 119.99574 * 260.89435 * 10 9 7 12 12 O 1.34228 * 119.99952 * 80.89636 * 10 9 7 13 13 C 1.50443 * 108.81112 * 298.03436 * 9 7 2 14 14 C 1.54312 * 108.49823 * 332.87109 * 13 9 7 15 15 C 1.45876 * 112.18493 * 281.45916 * 14 13 9 16 16 C 1.54313 * 112.18820 * 61.12344 * 15 14 13 17 17 C 1.50445 * 108.48731 * 281.46461 * 16 15 14 18 18 N 1.47998 * 108.81049 * 174.74288 * 9 7 2 19 19 H 0.97001 * 120.00276 * 183.92965 * 1 2 3 20 20 H 0.96704 * 116.99652 * 179.97438 * 12 10 9 21 21 H 1.09008 * 109.62961 * 92.56928 * 13 9 7 22 22 H 1.08999 * 109.63575 * 213.16537 * 13 9 7 23 23 H 1.08996 * 108.93755 * 160.76177 * 14 13 9 24 24 H 1.09001 * 108.93291 * 42.15486 * 14 13 9 25 25 H 1.09001 * 108.94162 * 300.42036 * 15 14 13 26 26 H 1.09008 * 108.93812 * 181.81232 * 15 14 13 27 27 H 1.08993 * 109.63388 * 161.76412 * 16 15 14 28 28 H 1.09000 * 109.80107 * 41.26063 * 16 15 14 29 29 H 1.08999 * 108.81388 * 332.86726 * 17 16 15 30 30 H 1.09003 * 108.72088 * 214.52963 * 17 16 15 31 31 H 1.00899 * 111.00679 * 312.19955 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2841 2.7465 0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0778 -1.1980 0.1200 9 6 1.2604 -2.4936 -0.1695 10 6 0.4715 -2.4378 -1.4523 11 8 -0.7072 -2.1738 -1.4255 12 8 1.0783 -2.6816 -2.6245 13 6 0.3032 -2.6575 0.9795 14 6 0.8617 -1.8888 2.1954 15 6 1.9245 -2.6245 2.8715 16 6 3.1334 -2.8825 1.9477 17 6 2.8016 -4.0341 1.0382 18 7 2.2422 -3.5973 -0.2606 19 1 -0.4850 -0.8381 0.0576 20 1 0.5309 -2.6345 -3.4203 21 1 -0.6707 -2.2517 0.7056 22 1 0.2062 -3.7145 1.2275 23 1 0.0518 -1.7080 2.9021 24 1 1.2548 -0.9299 1.8575 25 1 1.5302 -3.5814 3.2136 26 1 2.2568 -2.0509 3.7368 27 1 4.0076 -3.1311 2.5493 28 1 3.3395 -1.9931 1.3522 29 1 2.0751 -4.6767 1.5355 30 1 3.7100 -4.6078 0.8545 31 1 2.9777 -3.3741 -0.9143 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722757916.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = -75.190982 kcal Electronic energy + Delta-G solvation = -15852.135444 eV Core-core repulsion = 13327.010236 eV Total energy + Delta-G solvation = -2525.125208 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85402 -37.76991 -35.07470 -33.23552 -32.46413 -30.21755 -26.04762 -25.07003 -23.84827 -21.31805 -19.62970 -18.73429 -17.03553 -16.84277 -16.28566 -14.59448 -14.31884 -14.02464 -13.74310 -13.55464 -13.27653 -12.49219 -12.19616 -11.90838 -11.67405 -11.14050 -10.81354 -10.43742 -10.32579 -10.24064 -9.98314 -9.82461 -9.70737 -9.55926 -9.13558 -8.91888 -8.24054 -7.41987 -6.35903 -4.29034 3.32249 3.36147 3.53964 3.58213 4.30931 4.38493 5.09011 5.25061 5.56875 5.73674 5.81839 6.24515 6.28128 6.34431 6.44194 6.49224 6.56806 6.75768 6.91447 7.03979 7.09542 7.28400 7.29294 7.51693 7.72891 7.79687 7.89600 8.24595 8.37458 8.69966 9.13290 9.38051 10.90242 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.019604 C = 0.014343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.087650 B = 1427.952286 C = 1951.755375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.027 3.973 3 Si 1.057 2.943 4 H -0.286 1.286 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.628 4.628 8 H 0.073 0.927 9 C 0.248 3.752 10 C 0.495 3.505 11 O -0.538 6.538 12 O -0.516 6.516 13 C -0.104 4.104 14 C -0.124 4.124 15 C -0.094 4.094 16 C -0.172 4.172 17 C 0.078 3.922 18 N -0.690 5.690 19 H 0.302 0.698 20 H 0.381 0.619 21 H 0.080 0.920 22 H 0.041 0.959 23 H 0.029 0.971 24 H 0.115 0.885 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.112 0.888 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -4.049 1.329 6.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.185 4.185 3 Si 0.885 3.115 4 H -0.213 1.213 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.666 4.666 8 H 0.090 0.910 9 C 0.157 3.843 10 C 0.339 3.661 11 O -0.426 6.426 12 O -0.325 6.325 13 C -0.143 4.143 14 C -0.160 4.160 15 C -0.131 4.131 16 C -0.211 4.211 17 C -0.051 4.051 18 N -0.321 5.321 19 H 0.120 0.880 20 H 0.237 0.763 21 H 0.098 0.902 22 H 0.060 0.940 23 H 0.047 0.953 24 H 0.132 0.868 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.130 0.870 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.984 -2.847 1.686 5.178 hybrid contribution 0.369 -0.871 -0.329 1.001 sum 4.353 -3.717 1.356 5.882 Atomic orbital electron populations 1.70680 1.06721 1.35098 1.39730 1.25773 0.96582 1.02472 0.93660 0.83722 0.75182 0.75833 0.76807 1.21253 1.21095 1.20571 1.22209 0.95137 0.91097 1.58144 0.90973 1.18173 0.89897 0.90795 0.85474 1.24947 0.86012 0.69451 0.85656 1.90536 1.18223 1.46587 1.87289 1.84656 1.47222 1.83398 1.17217 1.21524 0.99324 0.98233 0.95175 1.20738 0.96339 1.03623 0.95338 1.20343 0.96457 0.98853 0.97460 1.22414 0.96683 1.02790 0.99178 1.21475 0.97415 0.96240 0.89993 1.60284 1.19834 1.41524 1.10501 0.87956 0.76342 0.90182 0.94022 0.95257 0.86758 0.94592 0.94018 0.94022 0.87028 0.92700 0.93092 0.84015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 12.51 55.43 0.69 -24.70 16 2 C 0.03 0.70 3.45 -17.82 -0.06 0.64 16 3 Si 1.06 23.57 29.91 -169.99 -5.08 18.49 16 4 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.63 -15.62 4.69 -34.44 -0.16 -15.78 16 8 H 0.07 1.76 5.78 -52.48 -0.30 1.46 16 9 C 0.25 5.89 0.68 -134.57 -0.09 5.80 16 10 C 0.50 12.34 6.34 36.01 0.23 12.57 16 11 O -0.54 -14.61 14.25 -18.75 -0.27 -14.88 16 12 O -0.52 -10.99 13.04 -39.25 -0.51 -11.51 16 13 C -0.10 -2.46 4.13 -27.32 -0.11 -2.57 16 14 C -0.12 -2.75 4.85 -29.42 -0.14 -2.89 16 15 C -0.09 -1.79 5.30 -29.42 -0.16 -1.94 16 16 C -0.17 -3.19 5.62 -27.32 -0.15 -3.34 16 17 C 0.08 1.42 6.01 -4.49 -0.03 1.40 16 18 N -0.69 -14.32 6.06 -103.44 -0.63 -14.94 16 19 H 0.30 8.75 2.86 -40.82 -0.12 8.63 16 20 H 0.38 6.33 9.10 45.56 0.41 6.75 16 21 H 0.08 2.10 4.97 -51.92 -0.26 1.84 16 22 H 0.04 0.93 7.08 -51.93 -0.37 0.57 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.11 2.84 4.17 -51.93 -0.22 2.62 16 25 H 0.04 0.64 7.52 -51.93 -0.39 0.25 16 26 H 0.04 0.74 8.14 -51.92 -0.42 0.31 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.11 2.34 4.09 -51.93 -0.21 2.12 16 29 H 0.05 1.01 6.59 -51.93 -0.34 0.66 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.34 6.96 8.56 -39.29 -0.34 6.62 16 LS Contribution 231.43 15.07 3.49 3.49 Total: -1.00 -29.34 231.43 -5.60 -34.94 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -2.61 Total: 15.24 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -0.68 Total: -6.13 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.07 Total: -39.64 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.78 Total: -26.38 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.08 Total: 18.49 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.34 -5.60 -34.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722757916.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.252 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds