Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99832 * 2 1 4 4 H 1.48499 * 109.47118 * 240.00250 * 3 2 1 5 5 H 1.48498 * 109.46967 * 120.00274 * 3 2 1 6 6 H 1.48497 * 109.47177 * 0.02562 * 3 2 1 7 7 C 1.37871 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00247 * 187.40573 * 7 2 1 9 9 C 1.50704 * 119.99971 * 7.41264 * 7 2 1 10 10 C 1.50699 * 108.78402 * 56.33862 * 9 7 2 11 11 O 1.20823 * 119.99574 * 260.89435 * 10 9 7 12 12 O 1.34228 * 119.99952 * 80.89636 * 10 9 7 13 13 C 1.50443 * 108.81112 * 298.03436 * 9 7 2 14 14 C 1.54312 * 108.49823 * 332.87109 * 13 9 7 15 15 C 1.45876 * 112.18493 * 281.45916 * 14 13 9 16 16 C 1.54313 * 112.18820 * 61.12344 * 15 14 13 17 17 C 1.50445 * 108.48731 * 281.46461 * 16 15 14 18 18 N 1.47998 * 108.81049 * 174.74288 * 9 7 2 19 19 H 0.97001 * 120.00276 * 183.92965 * 1 2 3 20 20 H 0.96704 * 116.99652 * 179.97438 * 12 10 9 21 21 H 1.09008 * 109.62961 * 92.56928 * 13 9 7 22 22 H 1.08999 * 109.63575 * 213.16537 * 13 9 7 23 23 H 1.08996 * 108.93755 * 160.76177 * 14 13 9 24 24 H 1.09001 * 108.93291 * 42.15486 * 14 13 9 25 25 H 1.09001 * 108.94162 * 300.42036 * 15 14 13 26 26 H 1.09008 * 108.93812 * 181.81232 * 15 14 13 27 27 H 1.08993 * 109.63388 * 161.76412 * 16 15 14 28 28 H 1.09000 * 109.80107 * 41.26063 * 16 15 14 29 29 H 1.08999 * 108.81388 * 332.86726 * 17 16 15 30 30 H 1.09003 * 108.72088 * 214.52963 * 17 16 15 31 31 H 1.00899 * 111.00679 * 312.19955 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2841 2.7465 0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0778 -1.1980 0.1200 9 6 1.2604 -2.4936 -0.1695 10 6 0.4715 -2.4378 -1.4523 11 8 -0.7072 -2.1738 -1.4255 12 8 1.0783 -2.6816 -2.6245 13 6 0.3032 -2.6575 0.9795 14 6 0.8617 -1.8888 2.1954 15 6 1.9245 -2.6245 2.8715 16 6 3.1334 -2.8825 1.9477 17 6 2.8016 -4.0341 1.0382 18 7 2.2422 -3.5973 -0.2606 19 1 -0.4850 -0.8381 0.0576 20 1 0.5309 -2.6345 -3.4203 21 1 -0.6707 -2.2517 0.7056 22 1 0.2062 -3.7145 1.2275 23 1 0.0518 -1.7080 2.9021 24 1 1.2548 -0.9299 1.8575 25 1 1.5302 -3.5814 3.2136 26 1 2.2568 -2.0509 3.7368 27 1 4.0076 -3.1311 2.5493 28 1 3.3395 -1.9931 1.3522 29 1 2.0751 -4.6767 1.5355 30 1 3.7100 -4.6078 0.8545 31 1 2.9777 -3.3741 -0.9143 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722757916.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = -96.644903 kcal Electronic energy + Delta-G solvation = -15853.065756 eV Core-core repulsion = 13327.010236 eV Total energy + Delta-G solvation = -2526.055520 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.69779 -39.52910 -36.91842 -35.06268 -34.11716 -32.00541 -27.88659 -26.73482 -25.69749 -23.05099 -21.25501 -20.55170 -18.89046 -18.67498 -18.09864 -16.33313 -16.15279 -15.80206 -15.43140 -15.26635 -14.95839 -14.13154 -13.94930 -13.66620 -13.34844 -12.84812 -12.56705 -12.30046 -12.01193 -11.99856 -11.73073 -11.62590 -11.38657 -11.22616 -10.88469 -10.73008 -10.17087 -9.12423 -8.35090 -6.30310 1.54030 1.57914 1.67521 1.78625 2.55062 2.57913 3.24019 3.50381 4.04812 4.18610 4.30326 4.58166 4.62075 4.63396 4.91473 4.95227 5.02119 5.07865 5.22320 5.39045 5.43762 5.60265 5.69314 5.72859 5.89282 6.00967 6.07620 6.43552 6.66415 6.76191 7.30233 7.45250 8.87586 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.019604 C = 0.014343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.087650 B = 1427.952286 C = 1951.755375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.015 4.015 3 Si 1.096 2.904 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.295 1.295 7 C -0.614 4.614 8 H 0.079 0.921 9 C 0.243 3.757 10 C 0.487 3.513 11 O -0.569 6.569 12 O -0.509 6.509 13 C -0.099 4.099 14 C -0.117 4.117 15 C -0.095 4.095 16 C -0.167 4.167 17 C 0.075 3.925 18 N -0.689 5.689 19 H 0.292 0.708 20 H 0.403 0.597 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.025 0.975 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.904 -4.805 1.814 8.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.220 4.220 3 Si 0.919 3.081 4 H -0.200 1.200 5 H -0.188 1.188 6 H -0.221 1.221 7 C -0.652 4.652 8 H 0.097 0.903 9 C 0.151 3.849 10 C 0.333 3.667 11 O -0.460 6.460 12 O -0.319 6.319 13 C -0.138 4.138 14 C -0.154 4.154 15 C -0.133 4.133 16 C -0.205 4.205 17 C -0.054 4.054 18 N -0.321 5.321 19 H 0.109 0.891 20 H 0.261 0.739 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.107 0.893 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.119 -3.629 2.155 7.433 hybrid contribution -0.274 -0.714 -0.524 0.926 sum 5.845 -4.343 1.632 7.462 Atomic orbital electron populations 1.70754 1.08033 1.34687 1.43161 1.26849 0.96425 1.05621 0.93092 0.83215 0.74355 0.72446 0.78066 1.20016 1.18823 1.22147 1.22426 0.95389 0.91337 1.56031 0.90287 1.18150 0.90380 0.91435 0.84932 1.25231 0.85763 0.68868 0.86874 1.90522 1.19637 1.47898 1.87911 1.84578 1.47241 1.82652 1.17415 1.21421 0.97919 0.98460 0.95974 1.20651 0.97239 1.02690 0.94852 1.20339 0.95786 0.99343 0.97802 1.22312 0.97420 1.01664 0.99107 1.21617 0.98662 0.96382 0.88731 1.60232 1.19765 1.39945 1.12168 0.89052 0.73903 0.93511 0.93289 0.95635 0.89273 0.93104 0.92492 0.90897 0.89405 0.92659 0.89957 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.30 12.51 21.45 0.27 -54.03 16 2 C -0.01 -0.78 3.45 84.65 0.29 -0.48 16 3 Si 1.10 47.05 29.91 68.60 2.05 49.10 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 6 H -0.30 -13.31 7.11 99.48 0.71 -12.61 16 7 C -0.61 -29.94 4.69 25.60 0.12 -29.82 16 8 H 0.08 3.71 5.78 -2.91 -0.02 3.69 16 9 C 0.24 11.35 0.68 1.00 0.00 11.35 16 10 C 0.49 24.23 6.34 71.24 0.45 24.68 16 11 O -0.57 -31.53 14.25 21.97 0.31 -31.22 16 12 O -0.51 -21.07 13.04 -51.39 -0.67 -21.74 16 13 C -0.10 -4.69 4.13 30.21 0.12 -4.57 16 14 C -0.12 -5.15 4.85 28.86 0.14 -5.01 16 15 C -0.10 -3.38 5.30 28.86 0.15 -3.23 16 16 C -0.17 -5.59 5.62 30.21 0.17 -5.42 16 17 C 0.07 2.46 6.01 85.26 0.51 2.97 16 18 N -0.69 -27.08 6.06 -481.18 -2.91 -30.00 16 19 H 0.29 17.46 2.86 -92.71 -0.26 17.20 16 20 H 0.40 12.86 9.10 -74.05 -0.67 12.19 16 21 H 0.05 2.53 4.97 -2.38 -0.01 2.52 16 22 H 0.05 2.17 7.08 -2.39 -0.02 2.16 16 23 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.09 4.41 4.17 -2.39 -0.01 4.40 16 25 H 0.05 1.66 7.52 -2.39 -0.02 1.64 16 26 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.09 3.42 4.09 -2.39 -0.01 3.41 16 29 H 0.05 1.84 6.59 -2.39 -0.02 1.82 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.35 13.16 8.56 -89.69 -0.77 12.39 16 Total: -1.00 -62.78 231.43 1.25 -61.53 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.24 Total: 35.87 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 1.96 Total: -9.52 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.65 Total: -84.02 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -0.36 Total: -52.95 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.05 Total: 49.10 kcal Total: -62.78 1.25 -61.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722757916.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.111 kcal (2) G-P(sol) polarization free energy of solvation -62.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds