Wall clock time and date at job start Mon Mar 30 2020 02:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47104 * 2 1 4 4 C 1.50690 * 112.94276 * 292.48184 * 3 2 1 5 5 O 1.20825 * 120.00145 * 114.45414 * 4 3 2 6 6 O 1.34231 * 120.00040 * 294.45961 * 4 3 2 7 7 C 1.53942 * 113.73128 * 160.77551 * 3 2 1 8 8 N 1.47962 * 86.17842 * 221.92436 * 7 3 2 9 9 C 1.46904 * 110.99890 * 137.58256 * 8 7 3 10 10 C 1.50703 * 109.47021 * 70.63516 * 9 8 7 11 11 H 1.08003 * 119.99834 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99837 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99611 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00250 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.46822 * 89.99855 * 14 12 10 16 16 H 1.48497 * 109.47424 * 209.99752 * 14 12 10 17 17 H 1.48503 * 109.47005 * 330.00013 * 14 12 10 18 18 C 1.47958 * 90.76416 * 24.69114 * 8 7 3 19 19 H 1.09004 * 109.47397 * 56.96479 * 1 2 3 20 20 H 1.09006 * 109.47082 * 176.96206 * 1 2 3 21 21 H 1.08998 * 109.47554 * 296.96614 * 1 2 3 22 22 H 1.08993 * 109.47170 * 120.00668 * 2 1 3 23 23 H 1.09004 * 109.46946 * 240.00474 * 2 1 3 24 24 H 0.96705 * 116.99827 * 179.97438 * 6 4 3 25 25 H 1.08998 * 113.75890 * 336.23928 * 7 3 2 26 26 H 1.08996 * 113.75729 * 107.60368 * 7 3 2 27 27 H 1.08993 * 109.46834 * 190.63748 * 9 8 7 28 28 H 1.09006 * 109.46903 * 310.64114 * 9 8 7 29 29 H 0.97005 * 120.00183 * 180.02562 * 13 12 10 30 30 H 1.09000 * 113.76101 * 220.99257 * 18 8 7 31 31 H 1.09002 * 113.75945 * 89.62589 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7355 2.1732 -1.2822 5 8 0.9775 3.1141 -1.2761 6 8 2.3063 1.7787 -2.4313 7 6 3.5010 1.5831 0.4640 8 7 3.0429 2.7695 1.2201 9 6 3.6412 2.8023 2.5614 10 6 5.1105 3.1176 2.4484 11 1 5.5552 3.2781 1.4774 12 6 5.8867 3.2023 3.5848 13 7 7.1689 3.4781 3.4862 14 14 5.1174 2.9255 5.2643 15 1 5.2003 1.4849 5.6153 16 1 5.8467 3.7254 6.2809 17 1 3.6935 3.3459 5.2318 18 6 1.6651 2.2321 1.2672 19 1 -0.3634 0.5602 -0.8615 20 1 -0.3633 -1.0263 -0.0545 21 1 -0.3634 0.4660 0.9159 22 1 1.8933 -0.5139 0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 2.0801 2.2781 -3.2279 25 1 3.8416 0.7636 1.0969 26 1 4.1970 1.8174 -0.3415 27 1 3.1498 3.5694 3.1597 28 1 3.5138 1.8312 3.0399 29 1 7.7151 3.5373 4.2856 30 1 0.8942 2.9850 1.1034 31 1 1.4687 1.6024 2.1349 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722837863.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:35 Heat of formation + Delta-G solvation = -63.299340 kcal Electronic energy + Delta-G solvation = -14613.806547 eV Core-core repulsion = 12089.197000 eV Total energy + Delta-G solvation = -2524.609548 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.86915 -38.59199 -35.86516 -33.88888 -32.46114 -29.57507 -26.62807 -25.42288 -23.35319 -22.96019 -20.31065 -19.20092 -17.60292 -16.84303 -16.17129 -15.82716 -14.72586 -14.54597 -14.30221 -13.80148 -13.40911 -12.99551 -12.50780 -12.42797 -12.23166 -11.99426 -11.46839 -11.39709 -11.15894 -10.99389 -10.66005 -10.27863 -10.22309 -9.86521 -9.76937 -9.30796 -8.63586 -7.98208 -6.09159 -4.07774 2.43504 3.15706 3.24690 3.33328 3.35412 4.36582 4.38274 4.57589 4.81301 5.15465 5.23221 5.30807 5.49830 5.51528 5.74870 5.85499 5.92723 5.99656 6.07258 6.17689 6.24124 6.36942 6.46065 6.65348 6.73155 7.25591 7.69923 7.77135 8.10791 8.56035 8.98552 9.51684 11.03991 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043665 B = 0.008261 C = 0.007659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.097773 B = 3388.753854 C = 3654.833790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.096 4.096 4 C 0.517 3.483 5 O -0.510 6.510 6 O -0.515 6.515 7 C 0.042 3.958 8 N -0.469 5.469 9 C 0.129 3.871 10 C -0.514 4.514 11 H 0.079 0.921 12 C 0.069 3.931 13 N -0.898 5.898 14 Si 0.876 3.124 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.266 1.266 18 C 0.019 3.981 19 H 0.050 0.950 20 H 0.058 0.942 21 H 0.060 0.940 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.406 0.594 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.033 0.967 28 H -0.007 1.007 29 H 0.264 0.736 30 H 0.094 0.906 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.678 -7.940 -7.160 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.098 4.098 4 C 0.359 3.641 5 O -0.397 6.397 6 O -0.326 6.326 7 C -0.087 4.087 8 N -0.191 5.191 9 C 0.002 3.998 10 C -0.552 4.552 11 H 0.097 0.903 12 C -0.133 4.133 13 N -0.537 5.537 14 Si 0.703 3.297 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.191 1.191 18 C -0.110 4.110 19 H 0.069 0.931 20 H 0.077 0.923 21 H 0.079 0.921 22 H 0.098 0.902 23 H 0.093 0.907 24 H 0.264 0.736 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.051 0.949 28 H 0.011 0.989 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.483 -7.187 -6.915 15.210 hybrid contribution -0.433 -0.485 0.891 1.103 sum -11.917 -7.672 -6.024 15.400 Atomic orbital electron populations 1.21785 0.95380 1.01633 1.02253 1.21502 0.96191 0.93078 1.03581 1.22247 1.01180 0.95860 0.90474 1.22496 0.75987 0.81267 0.84361 1.90670 1.34906 1.27674 1.86458 1.84528 1.68464 1.60732 1.18879 1.23806 0.91894 0.94470 0.98499 1.68588 1.00596 1.33008 1.16912 1.20690 0.97084 0.95434 0.86636 1.20957 0.90569 1.48146 0.95499 0.90289 1.24917 0.94713 0.94704 0.98929 1.69896 1.05442 1.49039 1.29328 0.86841 0.79952 0.78448 0.84420 1.20271 1.21050 1.19104 1.23999 0.96205 0.97252 0.93548 0.93096 0.92341 0.92135 0.90211 0.90679 0.73631 0.89916 0.89361 0.94882 0.98910 0.92589 0.88788 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.62 37.16 0.36 -1.28 16 2 C -0.11 -1.26 5.38 -26.73 -0.14 -1.41 16 3 C -0.10 -1.48 0.93 -154.73 -0.14 -1.63 16 4 C 0.52 8.20 6.45 36.00 0.23 8.43 16 5 O -0.51 -9.39 16.71 -18.75 -0.31 -9.71 16 6 O -0.51 -6.53 13.42 -39.26 -0.53 -7.06 16 7 C 0.04 0.78 6.59 -2.76 -0.02 0.76 16 8 N -0.47 -10.10 6.17 -239.45 -1.48 -11.57 16 9 C 0.13 3.13 3.65 -4.97 -0.02 3.11 16 10 C -0.51 -14.70 9.40 -34.44 -0.32 -15.03 16 11 H 0.08 2.48 8.05 -52.48 -0.42 2.05 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 14 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 18 C 0.02 0.33 6.28 -2.77 -0.02 0.31 16 19 H 0.05 0.58 7.56 -51.93 -0.39 0.19 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16 22 H 0.08 0.90 8.02 -51.93 -0.42 0.49 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.41 3.28 9.10 45.56 0.41 3.70 16 25 H 0.08 1.49 7.66 -51.93 -0.40 1.09 16 26 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 27 H 0.03 0.83 7.20 -51.93 -0.37 0.46 16 28 H -0.01 -0.16 7.12 -51.93 -0.37 -0.53 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.09 1.66 7.34 -51.93 -0.38 1.28 16 31 H 0.07 1.17 7.75 -51.93 -0.40 0.77 16 LS Contribution 262.39 15.07 3.95 3.95 Total: -1.00 -33.12 262.39 -6.00 -39.12 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -3.57 Total: 0.14 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.17 Total: -4.81 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.70 Total: -38.36 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.84 Total: -16.77 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.12 -6.00 -39.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722837863.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.177 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds