Wall clock time and date at job start Mon Mar 30 2020 02:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47104 * 2 1 4 4 C 1.50690 * 112.94276 * 292.48184 * 3 2 1 5 5 O 1.20825 * 120.00145 * 114.45414 * 4 3 2 6 6 O 1.34231 * 120.00040 * 294.45961 * 4 3 2 7 7 C 1.53942 * 113.73128 * 160.77551 * 3 2 1 8 8 N 1.47962 * 86.17842 * 221.92436 * 7 3 2 9 9 C 1.46904 * 110.99890 * 137.58256 * 8 7 3 10 10 C 1.50703 * 109.47021 * 70.63516 * 9 8 7 11 11 H 1.08003 * 119.99834 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99837 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99611 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00250 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.46822 * 89.99855 * 14 12 10 16 16 H 1.48497 * 109.47424 * 209.99752 * 14 12 10 17 17 H 1.48503 * 109.47005 * 330.00013 * 14 12 10 18 18 C 1.47958 * 90.76416 * 24.69114 * 8 7 3 19 19 H 1.09004 * 109.47397 * 56.96479 * 1 2 3 20 20 H 1.09006 * 109.47082 * 176.96206 * 1 2 3 21 21 H 1.08998 * 109.47554 * 296.96614 * 1 2 3 22 22 H 1.08993 * 109.47170 * 120.00668 * 2 1 3 23 23 H 1.09004 * 109.46946 * 240.00474 * 2 1 3 24 24 H 0.96705 * 116.99827 * 179.97438 * 6 4 3 25 25 H 1.08998 * 113.75890 * 336.23928 * 7 3 2 26 26 H 1.08996 * 113.75729 * 107.60368 * 7 3 2 27 27 H 1.08993 * 109.46834 * 190.63748 * 9 8 7 28 28 H 1.09006 * 109.46903 * 310.64114 * 9 8 7 29 29 H 0.97005 * 120.00183 * 180.02562 * 13 12 10 30 30 H 1.09000 * 113.76101 * 220.99257 * 18 8 7 31 31 H 1.09002 * 113.75945 * 89.62589 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7355 2.1732 -1.2822 5 8 0.9775 3.1141 -1.2761 6 8 2.3063 1.7787 -2.4313 7 6 3.5010 1.5831 0.4640 8 7 3.0429 2.7695 1.2201 9 6 3.6412 2.8023 2.5614 10 6 5.1105 3.1176 2.4484 11 1 5.5552 3.2781 1.4774 12 6 5.8867 3.2023 3.5848 13 7 7.1689 3.4781 3.4862 14 14 5.1174 2.9255 5.2643 15 1 5.2003 1.4849 5.6153 16 1 5.8467 3.7254 6.2809 17 1 3.6935 3.3459 5.2318 18 6 1.6651 2.2321 1.2672 19 1 -0.3634 0.5602 -0.8615 20 1 -0.3633 -1.0263 -0.0545 21 1 -0.3634 0.4660 0.9159 22 1 1.8933 -0.5139 0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 2.0801 2.2781 -3.2279 25 1 3.8416 0.7636 1.0969 26 1 4.1970 1.8174 -0.3415 27 1 3.1498 3.5694 3.1597 28 1 3.5138 1.8312 3.0399 29 1 7.7151 3.5373 4.2856 30 1 0.8942 2.9850 1.1034 31 1 1.4687 1.6024 2.1349 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722837863.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:35 Heat of formation + Delta-G solvation = -89.598391 kcal Electronic energy + Delta-G solvation = -14614.946960 eV Core-core repulsion = 12089.197000 eV Total energy + Delta-G solvation = -2525.749960 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.18975 -39.94501 -37.06647 -35.43381 -34.25491 -31.23256 -28.18957 -26.88652 -24.84229 -24.18850 -21.97470 -20.43911 -19.00177 -18.79711 -17.46993 -17.20714 -16.44873 -15.91335 -15.79089 -15.03052 -14.92159 -14.54353 -14.08420 -13.86284 -13.62815 -13.25874 -12.94304 -12.70749 -12.56501 -12.42574 -12.08144 -11.81348 -11.57716 -11.49996 -11.39506 -11.25277 -10.82147 -9.59456 -8.31106 -6.36441 1.18402 1.33917 1.37524 1.48233 2.04088 2.33328 3.00363 3.08812 3.16436 3.65013 4.11341 4.33163 4.37002 4.39043 4.52425 4.58624 4.66001 4.78760 4.82759 4.88410 4.99536 5.09075 5.19328 5.36520 5.41343 5.58862 5.70934 5.96340 6.48481 6.69264 7.00629 7.27774 8.85721 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043665 B = 0.008261 C = 0.007659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.097773 B = 3388.753854 C = 3654.833790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.080 4.080 4 C 0.517 3.483 5 O -0.541 6.541 6 O -0.507 6.507 7 C 0.039 3.961 8 N -0.505 5.505 9 C 0.140 3.860 10 C -0.524 4.524 11 H 0.031 0.969 12 C 0.008 3.992 13 N -0.947 5.947 14 Si 0.951 3.049 15 H -0.259 1.259 16 H -0.283 1.283 17 H -0.250 1.250 18 C 0.023 3.977 19 H 0.041 0.959 20 H 0.081 0.919 21 H 0.059 0.941 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.427 0.573 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.027 0.973 28 H 0.010 0.990 29 H 0.268 0.732 30 H 0.088 0.912 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 -9.620 -6.431 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.082 4.082 4 C 0.360 3.640 5 O -0.431 6.431 6 O -0.320 6.320 7 C -0.090 4.090 8 N -0.227 5.227 9 C 0.012 3.988 10 C -0.562 4.562 11 H 0.050 0.950 12 C -0.190 4.190 13 N -0.588 5.588 14 Si 0.774 3.226 15 H -0.184 1.184 16 H -0.209 1.209 17 H -0.173 1.173 18 C -0.106 4.106 19 H 0.060 0.940 20 H 0.100 0.900 21 H 0.078 0.922 22 H 0.110 0.890 23 H 0.106 0.894 24 H 0.288 0.712 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.045 0.955 28 H 0.028 0.972 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.364 -8.882 -6.233 17.214 hybrid contribution 0.212 0.073 0.500 0.548 sum -13.152 -8.808 -5.733 16.835 Atomic orbital electron populations 1.21773 0.94186 1.03013 1.01800 1.21551 0.97102 0.90316 1.04869 1.22119 0.98427 0.97949 0.89711 1.22593 0.75486 0.80657 0.85228 1.90664 1.36452 1.28874 1.87065 1.84475 1.67636 1.60772 1.19122 1.23792 0.93742 0.93500 0.97955 1.68497 1.03153 1.35499 1.15589 1.20461 0.94100 0.95738 0.88516 1.21182 0.93177 1.48123 0.93713 0.95029 1.25917 0.95066 0.94196 1.03779 1.70058 1.07323 1.50536 1.30860 0.85651 0.79565 0.79225 0.78143 1.18410 1.20853 1.17336 1.24042 0.93541 0.97557 0.95448 0.94027 0.89988 0.92222 0.88991 0.89399 0.71184 0.89325 0.90896 0.95502 0.97196 0.92318 0.89361 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.62 71.98 0.69 -2.04 16 2 C -0.10 -2.09 5.38 30.59 0.16 -1.92 16 3 C -0.08 -2.35 0.93 -52.28 -0.05 -2.39 16 4 C 0.52 15.74 6.45 71.23 0.46 16.20 16 5 O -0.54 -19.50 16.71 21.97 0.37 -19.14 16 6 O -0.51 -11.99 13.42 -51.43 -0.69 -12.68 16 7 C 0.04 1.42 6.59 86.41 0.57 1.99 16 8 N -0.50 -21.58 6.17 -911.48 -5.62 -27.20 16 9 C 0.14 6.69 3.65 85.56 0.31 7.00 16 10 C -0.52 -30.64 9.40 25.60 0.24 -30.40 16 11 H 0.03 2.08 8.05 -2.91 -0.02 2.06 16 12 C 0.01 0.47 5.47 84.65 0.46 0.93 16 13 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 14 Si 0.95 43.49 27.47 68.60 1.88 45.37 16 15 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 18 C 0.02 0.75 6.28 86.41 0.54 1.29 16 19 H 0.04 0.83 7.56 -2.38 -0.02 0.82 16 20 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 21 H 0.06 1.10 7.68 -2.39 -0.02 1.08 16 22 H 0.09 1.73 8.02 -2.39 -0.02 1.71 16 23 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.43 6.11 9.10 -74.05 -0.67 5.43 16 25 H 0.09 3.09 7.66 -2.39 -0.02 3.07 16 26 H 0.07 2.81 8.09 -2.39 -0.02 2.79 16 27 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 28 H 0.01 0.46 7.12 -2.38 -0.02 0.44 16 29 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 30 H 0.09 3.02 7.34 -2.39 -0.02 3.00 16 31 H 0.10 2.76 7.75 -2.39 -0.02 2.74 16 Total: -1.00 -72.68 262.39 0.03 -72.65 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.39 Total: 9.50 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 3.39 Total: -9.34 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -5.32 Total: -86.37 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.32 Total: -31.82 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Total: -72.68 0.03 -72.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722837863.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.948 kcal (2) G-P(sol) polarization free energy of solvation -72.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds