Wall clock time and date at job start Mon Mar 30 2020 02:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99784 * 2 1 4 4 H 1.48498 * 109.47433 * 270.00506 * 3 2 1 5 5 H 1.48494 * 109.47324 * 30.01088 * 3 2 1 6 6 H 1.48507 * 109.46555 * 150.00977 * 3 2 1 7 7 C 1.38811 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00408 * 179.97438 * 7 2 1 9 9 N 1.36947 * 119.99548 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99769 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46898 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.36843 * 59.29725 * 11 10 9 13 13 C 1.54923 * 110.50967 * 181.71482 * 11 10 9 14 14 C 1.54946 * 101.30442 * 156.64754 * 13 11 10 15 15 H 1.09004 * 114.45225 * 204.30970 * 14 13 11 16 16 C 1.54775 * 108.49247 * 76.13645 * 14 13 11 17 17 O 1.44459 * 103.45247 * 215.44350 * 16 14 13 18 18 C 1.43838 * 106.50819 * 41.59571 * 17 16 14 19 19 C 1.54163 * 107.13354 * 330.56437 * 18 17 16 20 20 H 1.08998 * 112.45577 * 244.05705 * 19 18 17 21 21 O 1.43210 * 109.01655 * 119.62379 * 19 18 17 22 22 H 0.96994 * 119.99764 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00001 * 0.02562 * 9 7 2 24 24 H 1.09001 * 109.47028 * 60.00026 * 10 9 7 25 25 H 1.08998 * 109.47166 * 299.99821 * 10 9 7 26 26 H 1.09000 * 111.05593 * 274.65786 * 13 11 10 27 27 H 1.09000 * 111.05605 * 38.64090 * 13 11 10 28 28 H 1.08997 * 110.62614 * 333.93960 * 16 14 13 29 29 H 1.09002 * 110.62791 * 96.95722 * 16 14 13 30 30 H 1.09001 * 109.90344 * 211.18696 * 18 17 16 31 31 H 1.09004 * 109.90555 * 89.94305 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.4211 -4.7688 -0.8800 13 6 1.8135 -6.1748 0.0422 14 6 0.7262 -7.1045 0.6375 15 1 1.1156 -7.9877 1.1438 16 6 -0.3051 -7.4262 -0.4709 17 8 -1.5586 -7.4890 0.2444 18 6 -1.5470 -6.4016 1.1858 19 6 -0.0748 -6.1444 1.5644 20 1 0.1242 -6.3395 2.6182 21 8 0.2737 -4.8042 1.1992 22 1 -0.4849 0.8400 0.0004 23 1 0.3556 -2.3881 -0.0005 24 1 2.6847 -3.7145 0.8895 25 1 2.6847 -3.7145 -0.8905 26 1 2.0987 -6.4968 -0.9593 27 1 2.6833 -6.1203 0.6968 28 1 -0.3279 -6.6315 -1.2166 29 1 -0.0808 -8.3855 -0.9373 30 1 -2.1166 -6.6738 2.0743 31 1 -1.9736 -5.5093 0.7274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724545555.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:10 Heat of formation + Delta-G solvation = -75.169158 kcal Electronic energy + Delta-G solvation = -14573.386662 eV Core-core repulsion = 12048.262400 eV Total energy + Delta-G solvation = -2525.124262 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66830 -37.08316 -34.42068 -32.49204 -31.43421 -29.45686 -27.85651 -25.25631 -23.21655 -22.18862 -20.80998 -20.38112 -17.28614 -16.68957 -16.02008 -15.71562 -15.23607 -14.72663 -14.54041 -13.86467 -13.13762 -13.01899 -12.75179 -12.51140 -11.94763 -11.57094 -11.26570 -11.19026 -10.88711 -10.82975 -10.72542 -10.51876 -10.01911 -9.82741 -9.63787 -9.19171 -8.84512 -6.86566 -5.70475 -2.99369 3.46739 3.51248 3.53642 3.74848 3.95917 4.42840 4.61876 4.72076 4.77919 5.00025 5.05372 5.21171 5.23917 5.48610 5.55930 5.62632 5.77099 5.80318 5.87004 5.93108 6.01670 6.11780 6.32088 6.53909 6.70284 6.79423 7.37857 7.73201 8.47742 9.59102 10.17398 10.53118 11.52275 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060860 B = 0.006778 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.959284 B = 4130.265915 C = 4370.832811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.158 3.842 11 C 0.073 3.927 12 H 0.069 0.931 13 C -0.141 4.141 14 C -0.155 4.155 15 H 0.107 0.893 16 C 0.048 3.952 17 O -0.379 6.379 18 C 0.027 3.973 19 C 0.048 3.952 20 H 0.104 0.896 21 O -0.350 6.350 22 H 0.255 0.745 23 H 0.388 0.612 24 H 0.025 0.975 25 H 0.031 0.969 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 -15.679 0.667 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.031 3.969 11 C 0.015 3.985 12 H 0.087 0.913 13 C -0.179 4.179 14 C -0.174 4.174 15 H 0.126 0.874 16 C -0.028 4.028 17 O -0.298 6.298 18 C -0.050 4.050 19 C -0.011 4.011 20 H 0.122 0.878 21 O -0.269 6.269 22 H 0.065 0.935 23 H 0.222 0.778 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.053 -15.504 0.750 15.558 hybrid contribution 0.345 0.899 -0.041 0.964 sum 1.398 -14.605 0.708 14.689 Atomic orbital electron populations 1.69678 1.05111 1.25560 1.57607 1.24754 0.95525 0.97677 1.03052 0.86180 0.78628 0.83859 0.77459 1.21749 1.21760 1.20786 1.19234 0.90982 0.84203 1.42794 0.91222 1.42268 1.06086 0.99602 1.89270 1.20765 0.92617 0.85165 0.98392 1.23383 0.92226 0.94946 0.87926 0.91326 1.23185 0.98264 0.94361 1.02122 1.24147 0.96765 0.99342 0.97110 0.87450 1.23694 0.82595 1.02280 0.94259 1.88915 1.37666 1.50577 1.52645 1.23819 0.97000 0.90878 0.93300 1.24060 0.93594 0.83793 0.99661 0.87805 1.88676 1.71478 1.23468 1.43294 0.93545 0.77841 0.95711 0.95149 0.89669 0.89825 0.91470 0.88850 0.89214 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.12 13.06 55.49 0.72 -28.40 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -7.00 9.99 -15.05 -0.15 -7.15 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -19.47 5.54 -59.91 -0.33 -19.80 16 10 C 0.16 3.31 6.01 -4.04 -0.02 3.29 16 11 C 0.07 1.24 3.05 -25.72 -0.08 1.17 16 12 H 0.07 1.20 7.14 -51.93 -0.37 0.83 16 13 C -0.14 -1.75 5.91 -24.69 -0.15 -1.90 16 14 C -0.15 -1.79 4.43 -87.25 -0.39 -2.18 16 15 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 16 C 0.05 0.57 6.94 38.09 0.26 0.83 16 17 O -0.38 -5.35 11.55 -35.23 -0.41 -5.76 16 18 C 0.03 0.37 7.46 37.77 0.28 0.65 16 19 C 0.05 0.67 4.60 -24.71 -0.11 0.55 16 20 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 21 O -0.35 -6.49 10.46 -35.23 -0.37 -6.86 16 22 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 23 H 0.39 11.06 7.65 -40.82 -0.31 10.75 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 27 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 28 H 0.07 0.84 6.61 -51.93 -0.34 0.49 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.15 7.92 -51.93 -0.41 0.74 16 LS Contribution 255.82 15.07 3.86 3.86 Total: -1.00 -32.74 255.82 -6.36 -39.10 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.36 Total: 5.25 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.45 Total: -5.24 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.39 Total: -48.20 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.78 Total: -12.62 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.74 -6.36 -39.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724545555.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.073 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds