Wall clock time and date at job start Mon Mar 30 2020 02:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99784 * 2 1 4 4 H 1.48498 * 109.47433 * 270.00506 * 3 2 1 5 5 H 1.48494 * 109.47324 * 30.01088 * 3 2 1 6 6 H 1.48507 * 109.46555 * 150.00977 * 3 2 1 7 7 C 1.38811 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00408 * 179.97438 * 7 2 1 9 9 N 1.36947 * 119.99548 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99769 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46898 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.36843 * 59.29725 * 11 10 9 13 13 C 1.54923 * 110.50967 * 181.71482 * 11 10 9 14 14 C 1.54946 * 101.30442 * 156.64754 * 13 11 10 15 15 H 1.09004 * 114.45225 * 204.30970 * 14 13 11 16 16 C 1.54775 * 108.49247 * 76.13645 * 14 13 11 17 17 O 1.44459 * 103.45247 * 215.44350 * 16 14 13 18 18 C 1.43838 * 106.50819 * 41.59571 * 17 16 14 19 19 C 1.54163 * 107.13354 * 330.56437 * 18 17 16 20 20 H 1.08998 * 112.45577 * 244.05705 * 19 18 17 21 21 O 1.43210 * 109.01655 * 119.62379 * 19 18 17 22 22 H 0.96994 * 119.99764 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00001 * 0.02562 * 9 7 2 24 24 H 1.09001 * 109.47028 * 60.00026 * 10 9 7 25 25 H 1.08998 * 109.47166 * 299.99821 * 10 9 7 26 26 H 1.09000 * 111.05593 * 274.65786 * 13 11 10 27 27 H 1.09000 * 111.05605 * 38.64090 * 13 11 10 28 28 H 1.08997 * 110.62614 * 333.93960 * 16 14 13 29 29 H 1.09002 * 110.62791 * 96.95722 * 16 14 13 30 30 H 1.09001 * 109.90344 * 211.18696 * 18 17 16 31 31 H 1.09004 * 109.90555 * 89.94305 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.4211 -4.7688 -0.8800 13 6 1.8135 -6.1748 0.0422 14 6 0.7262 -7.1045 0.6375 15 1 1.1156 -7.9877 1.1438 16 6 -0.3051 -7.4262 -0.4709 17 8 -1.5586 -7.4890 0.2444 18 6 -1.5470 -6.4016 1.1858 19 6 -0.0748 -6.1444 1.5644 20 1 0.1242 -6.3395 2.6182 21 8 0.2737 -4.8042 1.1992 22 1 -0.4849 0.8400 0.0004 23 1 0.3556 -2.3881 -0.0005 24 1 2.6847 -3.7145 0.8895 25 1 2.6847 -3.7145 -0.8905 26 1 2.0987 -6.4968 -0.9593 27 1 2.6833 -6.1203 0.6968 28 1 -0.3279 -6.6315 -1.2166 29 1 -0.0808 -8.3855 -0.9373 30 1 -2.1166 -6.6738 2.0743 31 1 -1.9736 -5.5093 0.7274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724545555.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:10 Heat of formation + Delta-G solvation = -99.889325 kcal Electronic energy + Delta-G solvation = -14574.458609 eV Core-core repulsion = 12048.262400 eV Total energy + Delta-G solvation = -2526.196208 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.78019 -38.30414 -36.34395 -33.78976 -33.18157 -30.92501 -29.13019 -26.83625 -24.76618 -23.68116 -21.99398 -21.58467 -19.24823 -17.97752 -17.25191 -16.80052 -16.71606 -16.25992 -15.78942 -15.48827 -15.07346 -14.34978 -14.05301 -13.99811 -13.16345 -13.10551 -12.83367 -12.76070 -12.25814 -12.20539 -12.05836 -11.96256 -11.78660 -11.54104 -10.98217 -10.92606 -10.45059 -9.02182 -7.95270 -5.25466 1.46150 1.49308 1.57790 2.54269 2.65130 2.94367 3.36825 3.39582 3.64473 3.73352 3.91826 4.01679 4.09364 4.19000 4.30664 4.40977 4.55753 4.67186 4.78467 4.82821 4.86319 4.90738 4.98631 5.10911 5.24143 5.45981 5.66196 6.16076 6.26409 7.31470 8.07372 8.30837 9.28612 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060860 B = 0.006778 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.959284 B = 4130.265915 C = 4370.832811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.980 3.020 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.250 4.250 8 H 0.079 0.921 9 N -0.745 5.745 10 C 0.154 3.846 11 C 0.073 3.927 12 H 0.057 0.943 13 C -0.128 4.128 14 C -0.138 4.138 15 H 0.141 0.859 16 C 0.042 3.958 17 O -0.392 6.392 18 C 0.028 3.972 19 C 0.036 3.964 20 H 0.122 0.878 21 O -0.389 6.389 22 H 0.251 0.749 23 H 0.373 0.627 24 H 0.023 0.977 25 H 0.045 0.955 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 -17.183 0.741 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.382 4.382 8 H 0.097 0.903 9 N -0.387 5.387 10 C 0.028 3.972 11 C 0.015 3.985 12 H 0.075 0.925 13 C -0.166 4.166 14 C -0.157 4.157 15 H 0.159 0.841 16 C -0.034 4.034 17 O -0.311 6.311 18 C -0.049 4.049 19 C -0.022 4.022 20 H 0.139 0.861 21 O -0.308 6.308 22 H 0.060 0.940 23 H 0.204 0.796 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.129 0.871 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.127 0.873 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.634 -17.051 0.819 17.273 hybrid contribution -0.141 1.300 -0.061 1.309 sum 2.493 -15.751 0.758 15.965 Atomic orbital electron populations 1.69858 1.06861 1.26111 1.59377 1.25680 0.96455 1.01455 1.03547 0.85051 0.77621 0.78954 0.77576 1.21059 1.22188 1.19232 1.19708 0.91614 0.85357 1.41488 0.90311 1.42521 1.05677 1.01208 1.89334 1.20978 0.93395 0.84322 0.98531 1.23285 0.91807 0.96037 0.87346 0.92521 1.23142 0.98147 0.91307 1.04028 1.24186 0.95765 0.99510 0.96218 0.84136 1.23897 0.81850 1.03567 0.94088 1.88904 1.39048 1.50243 1.52893 1.23778 0.97343 0.90028 0.93774 1.24359 0.94000 0.82623 1.01209 0.86080 1.88634 1.71960 1.26593 1.43661 0.94011 0.79559 0.95885 0.93755 0.87129 0.88868 0.92790 0.85760 0.87296 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.21 13.06 21.65 0.28 -61.93 16 2 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 3 Si 0.98 47.34 29.55 68.60 2.03 49.36 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.75 -40.57 5.54 -343.45 -1.90 -42.47 16 10 C 0.15 6.40 6.01 86.38 0.52 6.92 16 11 C 0.07 2.45 3.05 31.25 0.10 2.55 16 12 H 0.06 2.02 7.14 -2.39 -0.02 2.00 16 13 C -0.13 -2.82 5.91 31.92 0.19 -2.63 16 14 C -0.14 -2.75 4.43 -8.61 -0.04 -2.79 16 15 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 16 C 0.04 0.89 6.94 72.59 0.50 1.39 16 17 O -0.39 -10.46 11.55 -148.98 -1.72 -12.18 16 18 C 0.03 0.75 7.46 72.38 0.54 1.29 16 19 C 0.04 0.96 4.60 31.90 0.15 1.10 16 20 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 21 O -0.39 -14.48 10.46 -148.98 -1.56 -16.04 16 22 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 23 H 0.37 22.10 7.65 -92.71 -0.71 21.39 16 24 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 26 H 0.11 1.89 8.06 -2.39 -0.02 1.87 16 27 H 0.09 1.91 8.07 -2.39 -0.02 1.89 16 28 H 0.05 1.28 6.61 -2.39 -0.02 1.27 16 29 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.11 2.44 8.14 -2.39 -0.02 2.43 16 31 H 0.05 1.50 7.92 -2.38 -0.02 1.48 16 Total: -1.00 -71.42 255.82 0.80 -70.62 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.41 Total: 22.85 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 3.26 Total: -10.21 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -1.62 Total: -104.40 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -3.28 Total: -28.22 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -71.42 0.80 -70.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724545555.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.270 kcal (2) G-P(sol) polarization free energy of solvation -71.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds