Wall clock time and date at job start Mon Mar 30 2020 02:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99838 * 2 1 4 4 H 1.48493 * 109.47118 * 270.00282 * 3 2 1 5 5 H 1.48503 * 109.47012 * 30.00058 * 3 2 1 6 6 H 1.48503 * 109.46994 * 150.00205 * 3 2 1 7 7 C 1.38808 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99909 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00089 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47160 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.08387 * 304.88880 * 11 10 9 13 13 C 1.55379 * 110.60459 * 183.42580 * 11 10 9 14 14 C 1.48641 * 102.03002 * 245.70326 * 13 11 10 15 15 H 1.09002 * 107.77234 * 76.10153 * 14 13 11 16 16 C 1.48726 * 132.36947 * 212.65440 * 14 13 11 17 17 O 1.46068 * 102.51408 * 158.27407 * 16 14 13 18 18 C 1.45163 * 109.17747 * 335.98993 * 17 16 14 19 19 C 1.52775 * 105.55565 * 351.67220 * 18 17 16 20 20 H 1.09005 * 112.64523 * 275.02001 * 19 18 17 21 21 O 1.42865 * 120.00110 * 137.90284 * 19 18 17 22 22 H 0.97003 * 119.99983 * 359.97438 * 1 2 3 23 23 H 0.97006 * 120.00080 * 0.02562 * 9 7 2 24 24 H 1.09009 * 109.46606 * 60.00659 * 10 9 7 25 25 H 1.09000 * 109.47558 * 300.00816 * 10 9 7 26 26 H 1.08998 * 111.61146 * 127.12060 * 13 11 10 27 27 H 1.09003 * 109.99096 * 3.56716 * 13 11 10 28 28 H 1.08998 * 110.79951 * 276.52572 * 16 14 13 29 29 H 1.08994 * 110.80078 * 39.82442 * 16 14 13 30 30 H 1.08999 * 110.23076 * 110.69266 * 18 17 16 31 31 H 1.08998 * 110.22827 * 232.56490 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.3752 -4.7238 0.8394 13 6 1.8120 -6.1787 0.0868 14 6 1.4983 -6.7899 -1.2314 15 1 2.1169 -6.2978 -1.9819 16 6 1.2997 -8.2000 -1.6605 17 8 0.5244 -8.0505 -2.8895 18 6 -0.1776 -6.7803 -2.8590 19 6 0.0310 -6.2307 -1.4489 20 1 -0.6964 -6.6181 -0.7355 21 8 0.3217 -4.8450 -1.2581 22 1 -0.4850 0.8401 0.0004 23 1 0.3555 -2.3880 -0.0002 24 1 2.6847 -3.7144 0.8907 25 1 2.6849 -3.7145 -0.8893 26 1 1.4330 -6.7942 0.9027 27 1 2.8833 -6.0082 0.1932 28 1 2.2564 -8.6814 -1.8626 29 1 0.7384 -8.7574 -0.9107 30 1 0.2458 -6.0979 -3.5960 31 1 -1.2394 -6.9318 -3.0526 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724620833.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:14 Heat of formation + Delta-G solvation = -76.810140 kcal Electronic energy + Delta-G solvation = -14450.455687 eV Core-core repulsion = 11925.260267 eV Total energy + Delta-G solvation = -2525.195420 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.00056 -38.59265 -36.39317 -33.80438 -33.21039 -30.86142 -29.46808 -27.26185 -24.73868 -22.76637 -22.64174 -21.45752 -19.19453 -18.39260 -17.19870 -16.93642 -16.64513 -16.15522 -15.75918 -15.30728 -15.21228 -14.52661 -14.09612 -13.88511 -13.48746 -13.12151 -12.89432 -12.79558 -12.74284 -12.25415 -12.09510 -11.84092 -11.58884 -11.28958 -10.97944 -10.77105 -10.59669 -9.04339 -7.96907 -5.27194 1.45669 1.48793 1.57151 2.18212 2.54556 2.74005 3.31646 3.38291 3.55119 3.66437 3.89852 3.95042 4.13100 4.28423 4.31702 4.35339 4.60778 4.64514 4.71587 4.78106 4.84935 4.88385 5.00760 5.09588 5.21188 5.44796 5.59172 5.86290 6.24408 7.30228 8.05057 8.28757 9.27020 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066340 B = 0.006308 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.966537 B = 4437.456805 C = 4607.897632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.251 4.251 8 H 0.078 0.922 9 N -0.745 5.745 10 C 0.154 3.846 11 C 0.070 3.930 12 H 0.074 0.926 13 C -0.103 4.103 14 C -0.166 4.166 15 H 0.062 0.938 16 C 0.078 3.922 17 O -0.400 6.400 18 C 0.062 3.938 19 C 0.009 3.991 20 H 0.108 0.892 21 O -0.379 6.379 22 H 0.252 0.748 23 H 0.374 0.626 24 H 0.050 0.950 25 H 0.017 0.983 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.704 -17.388 -0.291 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.383 4.383 8 H 0.096 0.904 9 N -0.387 5.387 10 C 0.027 3.973 11 C 0.013 3.987 12 H 0.092 0.908 13 C -0.141 4.141 14 C -0.185 4.185 15 H 0.080 0.920 16 C 0.003 3.997 17 O -0.320 6.320 18 C -0.014 4.014 19 C -0.049 4.049 20 H 0.126 0.874 21 O -0.299 6.299 22 H 0.061 0.939 23 H 0.205 0.795 24 H 0.068 0.932 25 H 0.035 0.965 26 H 0.128 0.872 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.815 -17.240 -0.608 17.478 hybrid contribution -0.125 1.407 0.014 1.412 sum 2.690 -15.833 -0.594 16.071 Atomic orbital electron populations 1.69850 1.06841 1.26195 1.59308 1.25667 0.96454 1.01422 1.03439 0.85061 0.77773 0.78996 0.77437 1.21507 1.21918 1.18998 1.19689 0.91597 0.85359 1.41611 0.90402 1.42525 1.05692 1.01164 1.89367 1.20999 0.93425 0.84354 0.98478 1.23862 0.93018 0.95799 0.86068 0.90758 1.21447 1.02468 0.93420 0.96785 1.22614 0.97430 0.98511 0.99994 0.91961 1.22086 0.97317 0.93600 0.86687 1.89282 1.64526 1.37274 1.40942 1.22740 0.98380 0.85478 0.94821 1.24848 0.98013 0.83239 0.98817 0.87398 1.89305 1.74855 1.23971 1.41768 0.93928 0.79462 0.93206 0.96528 0.87174 0.88667 0.87198 0.88967 0.91857 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.81 13.06 21.65 0.28 -61.53 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 3 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.25 -14.61 9.99 84.03 0.84 -13.77 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.74 -40.22 5.58 -343.45 -1.92 -42.14 16 10 C 0.15 6.36 5.80 86.38 0.50 6.86 16 11 C 0.07 2.31 3.39 31.41 0.11 2.41 16 12 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 13 C -0.10 -2.28 6.45 30.03 0.19 -2.09 16 14 C -0.17 -3.81 2.94 -11.55 -0.03 -3.84 16 15 H 0.06 1.73 7.94 -2.39 -0.02 1.71 16 16 C 0.08 1.42 7.61 70.63 0.54 1.96 16 17 O -0.40 -9.79 11.57 -148.98 -1.72 -11.51 16 18 C 0.06 1.57 7.59 71.91 0.55 2.11 16 19 C 0.01 0.25 4.07 32.50 0.13 0.38 16 20 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 21 O -0.38 -14.24 11.23 -148.98 -1.67 -15.92 16 22 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 23 H 0.37 21.80 7.67 -92.70 -0.71 21.09 16 24 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.09 1.94 7.73 -2.39 -0.02 1.92 16 28 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -70.66 258.42 0.69 -69.97 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.40 Total: 22.05 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 3.29 Total: -10.13 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -1.64 Total: -103.66 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -3.40 Total: -27.43 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -70.66 0.69 -69.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724620833.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.842 kcal (2) G-P(sol) polarization free energy of solvation -70.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds