Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00090 * 2 1 4 4 H 1.48498 * 109.47599 * 270.00372 * 3 2 1 5 5 H 1.48498 * 109.47131 * 30.00291 * 3 2 1 6 6 H 1.48505 * 109.47364 * 149.99945 * 3 2 1 7 7 C 1.38815 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00562 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99884 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47116 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.99797 * 306.34634 * 11 10 9 13 13 C 1.56164 * 110.01281 * 185.00073 * 11 10 9 14 14 C 1.53824 * 100.25606 * 216.95179 * 13 11 10 15 15 H 1.08994 * 114.66033 * 280.73928 * 14 13 11 16 16 C 1.53413 * 117.63324 * 142.17659 * 14 13 11 17 17 O 1.45614 * 103.07206 * 215.67469 * 16 14 13 18 18 C 1.45528 * 109.03319 * 27.07008 * 17 16 14 19 19 C 1.48947 * 104.89096 * 4.96059 * 18 17 16 20 20 H 1.09002 * 105.79831 * 72.76699 * 19 18 17 21 21 O 1.37605 * 133.93494 * 204.63787 * 19 18 17 22 22 H 0.96994 * 120.00653 * 359.97438 * 1 2 3 23 23 H 0.96999 * 120.00272 * 0.02562 * 9 7 2 24 24 H 1.09000 * 109.46928 * 60.00247 * 10 9 7 25 25 H 1.09004 * 109.47183 * 300.00234 * 10 9 7 26 26 H 1.08998 * 111.25418 * 99.20113 * 13 11 10 27 27 H 1.08999 * 111.29278 * 334.72309 * 13 11 10 28 28 H 1.08991 * 110.69930 * 97.27652 * 16 14 13 29 29 H 1.09000 * 110.69546 * 334.06180 * 16 14 13 30 30 H 1.09003 * 110.35060 * 246.11440 * 18 17 16 31 31 H 1.08995 * 110.44715 * 123.86237 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3599 -4.7088 0.8235 13 6 1.8276 -6.1759 0.1267 14 6 0.9701 -7.0609 -0.7939 15 1 0.0456 -7.4233 -0.3444 16 6 1.6955 -8.0968 -1.6625 17 8 0.9141 -8.1013 -2.8913 18 6 0.2773 -6.8029 -3.0536 19 6 0.8065 -5.9745 -1.9345 20 1 1.8411 -5.7507 -2.1945 21 8 0.3397 -4.8687 -1.2615 22 1 -0.4851 0.8399 0.0004 23 1 0.3555 -2.3881 -0.0005 24 1 2.6847 -3.7146 0.8895 25 1 2.6848 -3.7146 -0.8905 26 1 1.8127 -6.5424 1.1531 27 1 2.8487 -6.0916 -0.2451 28 1 1.6750 -9.0784 -1.1894 29 1 2.7209 -7.7841 -1.8594 30 1 -0.8056 -6.8992 -2.9747 31 1 0.5494 -6.3626 -4.0128 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724620834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = -45.539989 kcal Electronic energy + Delta-G solvation = -14464.734754 eV Core-core repulsion = 11940.895310 eV Total energy + Delta-G solvation = -2523.839444 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.07609 -37.63029 -34.49976 -32.48709 -31.43069 -29.57388 -28.29395 -25.51115 -22.87691 -21.97039 -20.99696 -20.38227 -17.74069 -17.08905 -16.16160 -15.35736 -15.19623 -14.91992 -14.49110 -13.65006 -13.50105 -13.08943 -12.86754 -12.45531 -12.14612 -11.89073 -11.69559 -11.15935 -10.89814 -10.79443 -10.60754 -10.27536 -10.03359 -9.81882 -9.65627 -9.05531 -8.87759 -6.90430 -5.73295 -3.02602 3.19313 3.45298 3.49711 3.51800 3.65814 4.29253 4.54199 4.68040 4.73233 5.02464 5.09722 5.14172 5.31143 5.38960 5.55446 5.59863 5.66926 5.71899 5.76350 5.89862 5.96304 6.10081 6.25466 6.50188 6.54260 6.75144 7.30799 7.70587 8.44775 9.56134 10.13590 10.49269 11.49428 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066091 B = 0.006307 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.555260 B = 4438.294736 C = 4570.330311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.144 3.856 11 C 0.075 3.925 12 H 0.095 0.905 13 C -0.132 4.132 14 C -0.190 4.190 15 H 0.110 0.890 16 C 0.060 3.940 17 O -0.383 6.383 18 C 0.079 3.921 19 C 0.040 3.960 20 H 0.039 0.961 21 O -0.328 6.328 22 H 0.255 0.745 23 H 0.387 0.613 24 H 0.032 0.968 25 H 0.022 0.978 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -15.646 -1.520 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.016 3.984 11 C 0.018 3.982 12 H 0.113 0.887 13 C -0.170 4.170 14 C -0.208 4.208 15 H 0.128 0.872 16 C -0.015 4.015 17 O -0.303 6.303 18 C 0.003 3.997 19 C -0.020 4.020 20 H 0.057 0.943 21 O -0.247 6.247 22 H 0.065 0.935 23 H 0.221 0.779 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.647 -15.531 -1.723 15.849 hybrid contribution 0.366 1.070 0.236 1.155 sum 3.012 -14.461 -1.487 14.846 Atomic orbital electron populations 1.69672 1.05129 1.25651 1.57486 1.24756 0.95526 0.97707 1.02935 0.86177 0.78600 0.83791 0.77532 1.21697 1.21727 1.20768 1.19225 0.90977 0.84176 1.42976 0.91239 1.42280 1.06045 0.99590 1.89281 1.21004 0.93105 0.85906 0.98379 1.24086 0.94137 0.94615 0.85345 0.88748 1.22912 0.99138 0.94280 1.00665 1.24788 1.01049 0.96964 0.98028 0.87150 1.23057 0.94465 0.99628 0.84399 1.89296 1.66494 1.31955 1.42547 1.21826 0.98248 0.82893 0.96749 1.22266 0.98223 0.87420 0.94135 0.94266 1.87871 1.63214 1.42392 1.31199 0.93479 0.77854 0.95047 0.96058 0.89682 0.89849 0.89184 0.91322 0.90376 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.99 13.06 55.49 0.72 -28.27 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.30 5.60 -59.91 -0.34 -19.64 16 10 C 0.14 2.98 5.90 -4.04 -0.02 2.96 16 11 C 0.07 1.27 3.47 -25.04 -0.09 1.18 16 12 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 13 C -0.13 -1.63 5.96 -24.61 -0.15 -1.78 16 14 C -0.19 -2.29 4.17 -87.02 -0.36 -2.65 16 15 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 16 C 0.06 0.65 7.26 37.37 0.27 0.92 16 17 O -0.38 -5.00 11.57 -35.23 -0.41 -5.41 16 18 C 0.08 1.02 7.64 35.17 0.27 1.29 16 19 C 0.04 0.60 3.81 -25.76 -0.10 0.50 16 20 H 0.04 0.61 7.07 -51.93 -0.37 0.24 16 21 O -0.33 -6.16 11.05 -25.10 -0.28 -6.43 16 22 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 23 H 0.39 10.94 7.67 -40.82 -0.31 10.63 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 0.98 7.69 -51.93 -0.40 0.58 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 257.45 15.07 3.88 3.88 Total: -1.00 -32.43 257.45 -6.28 -38.72 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.42 Total: 4.61 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.42 Total: -5.22 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.39 Total: -47.91 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.69 Total: -11.84 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.43 -6.28 -38.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724620834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.825 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds