Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00090 * 2 1 4 4 H 1.48498 * 109.47599 * 270.00372 * 3 2 1 5 5 H 1.48498 * 109.47131 * 30.00291 * 3 2 1 6 6 H 1.48505 * 109.47364 * 149.99945 * 3 2 1 7 7 C 1.38815 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00562 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99884 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47116 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.99797 * 306.34634 * 11 10 9 13 13 C 1.56164 * 110.01281 * 185.00073 * 11 10 9 14 14 C 1.53824 * 100.25606 * 216.95179 * 13 11 10 15 15 H 1.08994 * 114.66033 * 280.73928 * 14 13 11 16 16 C 1.53413 * 117.63324 * 142.17659 * 14 13 11 17 17 O 1.45614 * 103.07206 * 215.67469 * 16 14 13 18 18 C 1.45528 * 109.03319 * 27.07008 * 17 16 14 19 19 C 1.48947 * 104.89096 * 4.96059 * 18 17 16 20 20 H 1.09002 * 105.79831 * 72.76699 * 19 18 17 21 21 O 1.37605 * 133.93494 * 204.63787 * 19 18 17 22 22 H 0.96994 * 120.00653 * 359.97438 * 1 2 3 23 23 H 0.96999 * 120.00272 * 0.02562 * 9 7 2 24 24 H 1.09000 * 109.46928 * 60.00247 * 10 9 7 25 25 H 1.09004 * 109.47183 * 300.00234 * 10 9 7 26 26 H 1.08998 * 111.25418 * 99.20113 * 13 11 10 27 27 H 1.08999 * 111.29278 * 334.72309 * 13 11 10 28 28 H 1.08991 * 110.69930 * 97.27652 * 16 14 13 29 29 H 1.09000 * 110.69546 * 334.06180 * 16 14 13 30 30 H 1.09003 * 110.35060 * 246.11440 * 18 17 16 31 31 H 1.08995 * 110.44715 * 123.86237 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3599 -4.7088 0.8235 13 6 1.8276 -6.1759 0.1267 14 6 0.9701 -7.0609 -0.7939 15 1 0.0456 -7.4233 -0.3444 16 6 1.6955 -8.0968 -1.6625 17 8 0.9141 -8.1013 -2.8913 18 6 0.2773 -6.8029 -3.0536 19 6 0.8065 -5.9745 -1.9345 20 1 1.8411 -5.7507 -2.1945 21 8 0.3397 -4.8687 -1.2615 22 1 -0.4851 0.8399 0.0004 23 1 0.3555 -2.3881 -0.0005 24 1 2.6847 -3.7146 0.8895 25 1 2.6848 -3.7146 -0.8905 26 1 1.8127 -6.5424 1.1531 27 1 2.8487 -6.0916 -0.2451 28 1 1.6750 -9.0784 -1.1894 29 1 2.7209 -7.7841 -1.8594 30 1 -0.8056 -6.8992 -2.9747 31 1 0.5494 -6.3626 -4.0128 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724620834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = -69.603824 kcal Electronic energy + Delta-G solvation = -14465.778240 eV Core-core repulsion = 11940.895310 eV Total energy + Delta-G solvation = -2524.882931 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.20444 -38.77473 -36.43932 -33.81195 -33.16669 -30.96125 -29.51330 -27.09431 -24.70400 -23.23845 -21.99620 -21.72044 -19.21828 -18.86653 -17.23450 -16.82512 -16.42941 -16.17487 -16.11205 -15.21608 -15.10795 -14.52365 -14.17114 -13.80955 -13.41550 -13.20178 -13.12728 -12.77344 -12.70523 -12.18777 -12.05569 -11.93936 -11.63530 -11.31213 -11.00671 -10.81562 -10.30755 -9.04839 -7.96978 -5.27460 1.45592 1.48589 1.56987 2.06282 2.54379 2.72676 3.19253 3.36270 3.50713 3.70942 3.98475 4.04728 4.08127 4.20995 4.25603 4.34795 4.50337 4.66199 4.72308 4.73575 4.81330 4.85331 4.95139 5.08373 5.25253 5.44098 5.57349 6.07466 6.24676 7.30007 8.04944 8.28577 9.26856 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066091 B = 0.006307 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.555260 B = 4438.294736 C = 4570.330311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.252 4.252 8 H 0.078 0.922 9 N -0.744 5.744 10 C 0.141 3.859 11 C 0.074 3.926 12 H 0.090 0.910 13 C -0.117 4.117 14 C -0.172 4.172 15 H 0.117 0.883 16 C 0.061 3.939 17 O -0.394 6.394 18 C 0.082 3.918 19 C 0.020 3.980 20 H 0.030 0.970 21 O -0.363 6.363 22 H 0.252 0.748 23 H 0.374 0.626 24 H 0.047 0.953 25 H 0.016 0.984 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.936 -16.922 -1.142 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.383 4.383 8 H 0.096 0.904 9 N -0.387 5.387 10 C 0.015 3.985 11 C 0.017 3.983 12 H 0.108 0.892 13 C -0.155 4.155 14 C -0.191 4.191 15 H 0.135 0.865 16 C -0.014 4.014 17 O -0.315 6.315 18 C 0.006 3.994 19 C -0.040 4.040 20 H 0.048 0.952 21 O -0.282 6.282 22 H 0.061 0.939 23 H 0.206 0.794 24 H 0.065 0.935 25 H 0.034 0.966 26 H 0.131 0.869 27 H 0.110 0.890 28 H 0.135 0.865 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.966 -16.851 -1.344 17.363 hybrid contribution -0.012 1.401 0.099 1.405 sum 3.954 -15.449 -1.245 15.996 Atomic orbital electron populations 1.69844 1.06837 1.26228 1.59222 1.25666 0.96448 1.01419 1.03405 0.85064 0.77751 0.79006 0.77461 1.21444 1.21934 1.19046 1.19683 0.91565 0.85366 1.41709 0.90450 1.42525 1.05680 1.01134 1.89343 1.21210 0.93824 0.85089 0.98409 1.24057 0.93669 0.95679 0.84882 0.89221 1.22871 0.98846 0.91238 1.02562 1.24756 1.01437 0.96189 0.96713 0.86455 1.23248 0.94310 1.00620 0.83266 1.89286 1.66890 1.31632 1.43646 1.21841 0.98621 0.82638 0.96337 1.22507 0.97771 0.87683 0.96076 0.95182 1.87822 1.63817 1.44420 1.32163 0.93901 0.79450 0.93500 0.96616 0.86864 0.88954 0.86463 0.90507 0.89784 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.64 13.06 21.65 0.28 -61.36 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 9 N -0.74 -40.03 5.60 -343.45 -1.92 -41.96 16 10 C 0.14 5.80 5.90 86.38 0.51 6.31 16 11 C 0.07 2.45 3.47 31.69 0.11 2.56 16 12 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 13 C -0.12 -2.59 5.96 31.97 0.19 -2.40 16 14 C -0.17 -3.72 4.17 -8.46 -0.04 -3.75 16 15 H 0.12 2.40 8.14 -2.39 -0.02 2.39 16 16 C 0.06 1.12 7.26 72.12 0.52 1.65 16 17 O -0.39 -9.43 11.57 -148.98 -1.72 -11.16 16 18 C 0.08 2.02 7.64 70.69 0.54 2.56 16 19 C 0.02 0.57 3.81 31.22 0.12 0.68 16 20 H 0.03 0.91 7.07 -2.39 -0.02 0.89 16 21 O -0.36 -13.70 11.05 -112.74 -1.25 -14.94 16 22 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 23 H 0.37 21.75 7.67 -92.71 -0.71 21.04 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.09 1.90 7.69 -2.39 -0.02 1.88 16 28 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.31 7.89 -2.39 -0.02 1.29 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -69.89 257.45 1.09 -68.81 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.41 Total: 21.82 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 3.26 Total: -10.27 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -1.64 Total: -103.32 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -2.97 Total: -26.10 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -69.89 1.09 -68.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724620834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.798 kcal (2) G-P(sol) polarization free energy of solvation -69.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds