Wall clock time and date at job start Mon Mar 30 2020 02:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99822 * 2 1 4 4 H 1.48501 * 109.47308 * 270.00343 * 3 2 1 5 5 H 1.48498 * 109.47095 * 30.00561 * 3 2 1 6 6 H 1.48503 * 109.46801 * 150.00662 * 3 2 1 7 7 C 1.38807 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00274 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00273 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00287 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47151 * 180.02562 * 10 9 7 12 12 H 1.09012 * 109.86853 * 305.89329 * 11 10 9 13 13 C 1.54175 * 109.81648 * 185.00293 * 11 10 9 14 14 C 1.54806 * 102.92054 * 219.20599 * 13 11 10 15 15 H 1.09006 * 113.92720 * 156.20040 * 14 13 11 16 16 C 1.54061 * 108.83793 * 284.49393 * 14 13 11 17 17 O 1.43287 * 107.84751 * 127.11374 * 16 14 13 18 18 C 1.43601 * 109.84263 * 2.72053 * 17 16 14 19 19 C 1.54819 * 105.44765 * 334.71876 * 18 17 16 20 20 H 1.09006 * 113.38379 * 158.13283 * 19 18 17 21 21 O 1.42993 * 109.82185 * 66.78128 * 11 10 9 22 22 H 0.97000 * 119.99880 * 359.97438 * 1 2 3 23 23 H 0.97004 * 119.99843 * 0.02562 * 9 7 2 24 24 H 1.08996 * 109.47029 * 60.00730 * 10 9 7 25 25 H 1.09000 * 109.47027 * 300.00090 * 10 9 7 26 26 H 1.09006 * 110.72632 * 100.85061 * 13 11 10 27 27 H 1.09001 * 110.87766 * 337.63798 * 13 11 10 28 28 H 1.09001 * 109.78563 * 7.52086 * 16 14 13 29 29 H 1.08999 * 109.81950 * 246.72696 * 16 14 13 30 30 H 1.09002 * 110.26739 * 93.73934 * 18 17 16 31 31 H 1.09003 * 110.26485 * 215.70117 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0011 12 1 5.8708 -1.5326 -0.8316 13 6 6.3943 -3.5164 -0.1276 14 6 7.5934 -3.3064 0.8287 15 1 8.0314 -4.2335 1.1988 16 6 8.6075 -2.3623 0.1551 17 8 8.8822 -1.2909 1.0660 18 6 8.1741 -1.5039 2.2969 19 6 6.9575 -2.3864 1.9254 20 1 6.5468 -2.9359 2.7726 21 8 5.9962 -1.5813 1.2352 22 1 -0.4850 0.8401 0.0004 23 1 3.8646 -0.3621 -0.0007 24 1 3.8485 -3.0426 -0.8909 25 1 3.8491 -3.0422 0.8891 26 1 6.7386 -3.6654 -1.1510 27 1 5.7834 -4.3581 0.1987 28 1 8.1844 -1.9636 -0.7669 29 1 9.5272 -2.9043 -0.0652 30 1 8.8110 -2.0216 3.0142 31 1 7.8384 -0.5523 2.7090 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724620835.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:18 Heat of formation + Delta-G solvation = -96.330712 kcal Electronic energy + Delta-G solvation = -14671.059092 eV Core-core repulsion = 12145.017196 eV Total energy + Delta-G solvation = -2526.041895 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.78835 -38.32995 -36.43774 -33.88162 -33.41595 -31.32293 -29.41727 -26.92319 -24.31970 -23.52047 -21.99197 -21.79900 -19.76497 -18.29826 -17.05151 -16.88408 -16.70026 -16.29675 -15.91013 -15.31332 -14.87075 -14.42764 -14.17784 -14.12734 -13.71333 -13.21521 -12.86763 -12.73128 -12.51298 -12.14742 -12.05085 -11.98664 -11.81932 -11.64009 -11.04901 -10.64979 -10.33471 -9.33189 -8.06625 -5.39149 1.35552 1.37779 1.46746 2.45353 2.54721 2.94946 3.24364 3.27387 3.53999 3.72018 3.87848 3.98096 4.06126 4.15268 4.36518 4.45386 4.48856 4.69751 4.72194 4.82351 4.83195 4.88660 4.96541 5.06874 5.24195 5.70037 5.99880 6.14419 6.20474 7.04086 7.81487 7.99899 9.14804 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047188 B = 0.008063 C = 0.007385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.226989 B = 3471.835409 C = 3790.791197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.237 4.237 8 H 0.060 0.940 9 N -0.758 5.758 10 C 0.145 3.855 11 C 0.075 3.925 12 H 0.072 0.928 13 C -0.130 4.130 14 C -0.140 4.140 15 H 0.148 0.852 16 C 0.051 3.949 17 O -0.406 6.406 18 C 0.046 3.954 19 C 0.034 3.966 20 H 0.117 0.883 21 O -0.390 6.390 22 H 0.259 0.741 23 H 0.365 0.635 24 H 0.045 0.955 25 H 0.024 0.976 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.736 -8.446 2.097 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.253 4.253 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.187 1.187 7 C -0.368 4.368 8 H 0.078 0.922 9 N -0.403 5.403 10 C 0.019 3.981 11 C 0.017 3.983 12 H 0.090 0.910 13 C -0.168 4.168 14 C -0.158 4.158 15 H 0.166 0.834 16 C -0.026 4.026 17 O -0.326 6.326 18 C -0.030 4.030 19 C -0.023 4.023 20 H 0.135 0.865 21 O -0.310 6.310 22 H 0.068 0.932 23 H 0.198 0.802 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.126 0.874 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.592 -8.186 2.108 22.260 hybrid contribution -0.386 0.912 -0.022 0.990 sum 20.207 -7.274 2.087 21.577 Atomic orbital electron populations 1.69873 1.06912 1.26726 1.59697 1.25460 0.96132 1.01090 1.02600 0.85426 0.78390 0.79888 0.78237 1.20072 1.21776 1.18704 1.19089 0.82672 0.93646 1.41378 0.92220 1.42704 1.02542 1.04255 1.90794 1.21250 0.90323 0.87739 0.98789 1.22970 0.93403 0.95420 0.86503 0.91034 1.23012 0.95465 0.96248 1.02098 1.24333 0.95886 1.00408 0.95153 0.83434 1.23327 0.99019 0.87478 0.92729 1.88385 1.70167 1.47541 1.26529 1.23694 0.91254 1.00847 0.87200 1.24813 0.89012 0.91999 0.96509 0.86505 1.88323 1.61365 1.47036 1.34259 0.93220 0.80247 0.93706 0.95779 0.87400 0.88672 0.91867 0.88879 0.88175 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.74 13.97 21.65 0.30 -64.43 16 2 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.95 48.42 27.74 68.60 1.90 50.32 16 4 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 6 H -0.26 -12.71 6.52 99.48 0.65 -12.06 16 7 C -0.24 -14.24 10.47 84.03 0.88 -13.36 16 8 H 0.06 3.85 8.06 -2.91 -0.02 3.83 16 9 N -0.76 -38.30 5.38 -343.45 -1.85 -40.15 16 10 C 0.15 5.73 5.79 86.38 0.50 6.23 16 11 C 0.07 2.31 2.99 30.99 0.09 2.40 16 12 H 0.07 2.30 8.06 -2.38 -0.02 2.28 16 13 C -0.13 -2.57 5.76 31.61 0.18 -2.39 16 14 C -0.14 -2.38 4.38 -8.55 -0.04 -2.42 16 15 H 0.15 1.50 8.14 -2.38 -0.02 1.48 16 16 C 0.05 0.99 7.01 72.34 0.51 1.50 16 17 O -0.41 -10.59 11.36 -147.26 -1.67 -12.26 16 18 C 0.05 1.03 7.38 72.60 0.54 1.56 16 19 C 0.03 0.80 4.80 32.49 0.16 0.95 16 20 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 21 O -0.39 -13.28 10.44 -147.26 -1.54 -14.81 16 22 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 23 H 0.36 18.27 5.53 -92.71 -0.51 17.76 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.11 1.67 7.99 -2.38 -0.02 1.66 16 27 H 0.09 1.72 7.84 -2.39 -0.02 1.70 16 28 H 0.06 1.35 7.21 -2.39 -0.02 1.33 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -74.73 253.68 0.97 -73.76 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.55 Total: 16.40 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 3.28 Total: -8.83 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -1.55 Total: -104.58 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -3.21 Total: -27.07 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 1.90 Total: 50.32 kcal Total: -74.73 0.97 -73.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724620835.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.574 kcal (2) G-P(sol) polarization free energy of solvation -74.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds