Wall clock time and date at job start Mon Mar 30 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00264 * 2 1 4 4 H 1.48497 * 109.47687 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47414 * 300.00643 * 3 2 1 6 6 H 1.48509 * 109.47076 * 59.99979 * 3 2 1 7 7 C 1.37879 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.53495 * 114.20478 * 180.02562 * 9 7 2 11 11 N 1.47065 * 87.98718 * 220.34542 * 10 9 7 12 12 C 1.34776 * 136.06136 * 207.08813 * 11 10 9 13 13 O 1.21275 * 119.99864 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00098 * 179.97438 * 12 11 10 15 15 F 1.39905 * 115.54916 * 335.58182 * 14 12 11 16 16 C 1.52995 * 117.49757 * 121.25231 * 14 12 11 17 17 C 1.53000 * 117.50034 * 189.91113 * 14 12 11 18 18 C 1.47071 * 87.88179 * 27.34140 * 11 10 9 19 19 H 0.96993 * 120.00071 * 359.97438 * 1 2 3 20 20 H 1.08994 * 113.41280 * 313.20484 * 9 7 2 21 21 H 1.09012 * 113.46465 * 105.56571 * 10 9 7 22 22 H 1.08993 * 113.52422 * 335.13823 * 10 9 7 23 23 H 1.09007 * 117.50112 * 215.00270 * 16 14 12 24 24 H 1.08997 * 117.50394 * 0.02562 * 16 14 12 25 25 H 1.09000 * 117.49640 * 359.97438 * 17 14 12 26 26 H 1.08999 * 117.49959 * 144.99344 * 17 14 12 27 27 H 1.09000 * 113.46267 * 87.43753 * 18 11 10 28 28 H 1.08995 * 113.47067 * 217.87547 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2100 -4.3575 -0.9520 12 6 0.8355 -5.6114 -1.2743 13 8 1.3306 -6.5584 -0.7009 14 6 -0.1986 -5.8367 -2.3471 15 9 -1.0767 -4.7711 -2.5721 16 6 0.2091 -6.6832 -3.5546 17 6 -0.7518 -7.2541 -2.5087 18 6 0.8644 -3.0005 -1.4017 19 1 -0.4850 0.8400 0.0004 20 1 0.4417 -2.5321 0.7288 21 1 2.1850 -4.2533 0.9628 22 1 3.1387 -3.5668 -0.4207 23 1 -0.2069 -6.4098 -4.5244 24 1 1.2251 -7.0775 -3.5729 25 1 -0.3674 -8.0237 -1.8393 26 1 -1.7998 -7.3563 -2.7902 27 1 1.5155 -2.6261 -2.1916 28 1 -0.1936 -2.8759 -1.6323 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855471206.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:12 Heat of formation + Delta-G solvation = -20.323905 kcal Electronic energy + Delta-G solvation = -14095.558363 eV Core-core repulsion = 11449.352065 eV Total energy + Delta-G solvation = -2646.206298 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.53031 -39.53515 -37.67041 -35.36203 -32.70594 -29.45756 -25.73639 -24.98537 -23.22841 -22.68819 -20.17149 -18.66765 -17.14488 -16.58064 -16.12081 -15.33020 -14.86914 -14.62097 -14.21986 -13.88172 -13.26214 -13.12642 -12.48906 -12.22865 -11.69746 -11.54088 -11.33730 -11.11564 -10.91963 -10.82560 -10.37836 -10.00266 -9.66539 -9.25851 -9.01704 -8.59376 -7.97033 -6.18469 -4.24728 2.64906 3.21416 3.23378 3.32098 3.35613 3.74570 4.12853 4.32768 4.62593 4.70450 4.88187 5.11040 5.45315 5.70218 5.75559 5.95700 6.04589 6.12357 6.20935 6.38996 6.56404 6.66236 6.84072 7.53632 7.78825 8.16126 8.31843 8.56012 8.79507 9.42189 10.91323 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.056982 B = 0.007543 C = 0.007035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.263071 B = 3711.004326 C = 3979.419665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.065 0.935 9 C 0.035 3.965 10 C 0.100 3.900 11 N -0.631 5.631 12 C 0.555 3.445 13 O -0.553 6.553 14 C 0.016 3.984 15 F -0.164 7.164 16 C -0.162 4.162 17 C -0.156 4.156 18 C 0.096 3.904 19 H 0.264 0.736 20 H 0.070 0.930 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.120 0.880 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 -8.131 -5.720 9.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.016 3.984 10 C -0.021 4.021 11 N -0.363 5.363 12 C 0.342 3.658 13 O -0.434 6.434 14 C -0.006 4.006 15 F -0.144 7.144 16 C -0.200 4.200 17 C -0.194 4.194 18 C -0.026 4.026 19 H 0.074 0.926 20 H 0.088 0.912 21 H 0.078 0.922 22 H 0.095 0.905 23 H 0.131 0.869 24 H 0.131 0.869 25 H 0.139 0.861 26 H 0.130 0.870 27 H 0.094 0.906 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.526 -8.651 -5.470 10.249 hybrid contribution 0.192 1.100 -0.248 1.144 sum -0.334 -7.551 -5.718 9.477 Atomic orbital electron populations 1.69967 1.06096 1.27093 1.48886 1.25041 0.94861 0.99452 0.94180 0.86467 0.80156 0.83264 0.77726 1.19548 1.20879 1.20848 1.20928 0.93034 0.89445 1.52219 0.91699 1.20415 0.94708 0.91109 0.92194 1.23444 0.94326 0.93120 0.91211 1.49965 1.41922 1.04816 1.39555 1.18882 0.82466 0.82080 0.82390 1.90661 1.58019 1.40966 1.53730 1.21140 0.94188 0.84621 1.00621 1.92882 1.69324 1.56810 1.95337 1.23630 1.01993 1.00576 0.93807 1.23625 1.00369 0.93759 1.01637 1.23820 1.00780 0.75932 1.02094 0.92618 0.91206 0.92189 0.90513 0.86875 0.86882 0.86132 0.87018 0.90640 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.37 13.26 55.43 0.74 -23.63 15 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 15 3 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 15 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.52 -13.27 8.82 -34.44 -0.30 -13.57 15 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 15 9 C 0.03 0.84 3.80 -91.12 -0.35 0.49 15 10 C 0.10 2.13 8.17 -8.52 -0.07 2.06 15 11 N -0.63 -13.46 3.68 -185.08 -0.68 -14.14 15 12 C 0.55 11.30 7.81 -10.99 -0.09 11.21 15 13 O -0.55 -12.20 17.08 5.56 0.10 -12.10 15 14 C 0.02 0.27 3.68 -91.78 -0.34 -0.07 15 15 F -0.16 -3.01 15.57 2.25 0.04 -2.98 15 16 C -0.16 -2.06 10.22 -26.70 -0.27 -2.33 15 17 C -0.16 -2.02 10.03 -26.70 -0.27 -2.29 15 18 C 0.10 2.12 7.48 -8.38 -0.06 2.06 15 19 H 0.26 6.90 8.31 -40.82 -0.34 6.57 15 20 H 0.07 1.83 8.11 -51.93 -0.42 1.40 15 21 H 0.06 1.23 8.14 -51.92 -0.42 0.81 15 22 H 0.08 1.53 8.10 -51.93 -0.42 1.11 15 23 H 0.11 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.11 1.37 8.14 -51.93 -0.42 0.95 15 25 H 0.12 1.57 7.71 -51.93 -0.40 1.17 15 26 H 0.11 1.19 8.14 -51.93 -0.42 0.77 15 27 H 0.08 1.63 8.10 -51.93 -0.42 1.21 15 28 H 0.07 1.60 6.92 -51.93 -0.36 1.24 15 LS Contribution 253.56 15.07 3.82 3.82 Total: -1.00 -28.81 253.56 -6.12 -34.93 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.26 Total: -0.24 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.84 Total: -0.74 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.05 Total: -37.77 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.10 Total: -12.10 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.81 -6.12 -34.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855471206.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.604 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds