Wall clock time and date at job start Mon Mar 30 2020 02:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00264 * 2 1 4 4 H 1.48497 * 109.47687 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47414 * 300.00643 * 3 2 1 6 6 H 1.48509 * 109.47076 * 59.99979 * 3 2 1 7 7 C 1.37879 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.53495 * 114.20478 * 180.02562 * 9 7 2 11 11 N 1.47065 * 87.98718 * 220.34542 * 10 9 7 12 12 C 1.34776 * 136.06136 * 207.08813 * 11 10 9 13 13 O 1.21275 * 119.99864 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00098 * 179.97438 * 12 11 10 15 15 F 1.39905 * 115.54916 * 335.58182 * 14 12 11 16 16 C 1.52995 * 117.49757 * 121.25231 * 14 12 11 17 17 C 1.53000 * 117.50034 * 189.91113 * 14 12 11 18 18 C 1.47071 * 87.88179 * 27.34140 * 11 10 9 19 19 H 0.96993 * 120.00071 * 359.97438 * 1 2 3 20 20 H 1.08994 * 113.41280 * 313.20484 * 9 7 2 21 21 H 1.09012 * 113.46465 * 105.56571 * 10 9 7 22 22 H 1.08993 * 113.52422 * 335.13823 * 10 9 7 23 23 H 1.09007 * 117.50112 * 215.00270 * 16 14 12 24 24 H 1.08997 * 117.50394 * 0.02562 * 16 14 12 25 25 H 1.09000 * 117.49640 * 359.97438 * 17 14 12 26 26 H 1.08999 * 117.49959 * 144.99344 * 17 14 12 27 27 H 1.09000 * 113.46267 * 87.43753 * 18 11 10 28 28 H 1.08995 * 113.47067 * 217.87547 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2100 -4.3575 -0.9520 12 6 0.8355 -5.6114 -1.2743 13 8 1.3306 -6.5584 -0.7009 14 6 -0.1986 -5.8367 -2.3471 15 9 -1.0767 -4.7711 -2.5721 16 6 0.2091 -6.6832 -3.5546 17 6 -0.7518 -7.2541 -2.5087 18 6 0.8644 -3.0005 -1.4017 19 1 -0.4850 0.8400 0.0004 20 1 0.4417 -2.5321 0.7288 21 1 2.1850 -4.2533 0.9628 22 1 3.1387 -3.5668 -0.4207 23 1 -0.2069 -6.4098 -4.5244 24 1 1.2251 -7.0775 -3.5729 25 1 -0.3674 -8.0237 -1.8393 26 1 -1.7998 -7.3563 -2.7902 27 1 1.5155 -2.6261 -2.1916 28 1 -0.1936 -2.8759 -1.6323 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855471206.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:11 Heat of formation + Delta-G solvation = -37.851903 kcal Electronic energy + Delta-G solvation = -14096.318434 eV Core-core repulsion = 11449.352065 eV Total energy + Delta-G solvation = -2646.966369 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.86046 -41.19560 -39.28483 -36.63075 -34.67731 -31.23061 -27.56055 -26.77564 -24.75403 -23.69386 -21.89128 -20.20276 -18.91907 -18.32560 -17.57627 -16.82164 -16.49989 -16.31259 -15.78361 -15.19118 -14.87642 -14.50862 -14.19815 -13.91541 -13.30499 -13.24494 -12.80117 -12.68471 -12.55881 -12.28747 -12.18719 -11.41497 -11.19410 -11.09863 -10.79238 -10.54608 -9.70137 -8.17911 -6.30248 1.18220 1.46506 1.49315 1.60489 1.71826 2.44967 2.53851 2.86242 3.11264 3.23174 3.63288 3.73704 4.15731 4.31325 4.41642 4.52038 4.62419 4.64556 4.76148 4.79421 4.98207 5.00215 5.01554 5.55204 5.78837 6.19286 6.66743 6.79428 6.91139 7.40297 8.92671 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.056982 B = 0.007543 C = 0.007035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.263071 B = 3711.004326 C = 3979.419665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.963 3.037 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.071 0.929 9 C 0.022 3.978 10 C 0.108 3.892 11 N -0.638 5.638 12 C 0.549 3.451 13 O -0.574 6.574 14 C -0.028 4.028 15 F -0.177 7.177 16 C -0.134 4.134 17 C -0.134 4.134 18 C 0.112 3.888 19 H 0.265 0.735 20 H 0.038 0.962 21 H 0.062 0.938 22 H 0.092 0.908 23 H 0.141 0.859 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.139 0.861 27 H 0.083 0.917 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.026 -8.723 -6.971 11.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.565 4.565 8 H 0.089 0.911 9 C 0.003 3.997 10 C -0.014 4.014 11 N -0.370 5.370 12 C 0.339 3.661 13 O -0.457 6.457 14 C -0.049 4.049 15 F -0.157 7.157 16 C -0.171 4.171 17 C -0.172 4.172 18 C -0.011 4.011 19 H 0.074 0.926 20 H 0.056 0.944 21 H 0.081 0.919 22 H 0.110 0.890 23 H 0.159 0.841 24 H 0.137 0.863 25 H 0.138 0.862 26 H 0.157 0.843 27 H 0.101 0.899 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.048 -9.263 -6.725 11.447 hybrid contribution 0.006 1.201 0.168 1.213 sum 0.054 -8.062 -6.557 10.392 Atomic orbital electron populations 1.70087 1.07645 1.27907 1.50243 1.25829 0.95554 1.02833 0.93897 0.85427 0.79251 0.79009 0.77491 1.18506 1.20631 1.20904 1.21241 0.93457 0.90208 1.51638 0.91070 1.20294 0.94640 0.92121 0.92660 1.23320 0.94534 0.91743 0.91788 1.49979 1.42174 1.05097 1.39738 1.19542 0.82720 0.81148 0.82732 1.90636 1.59084 1.41216 1.54714 1.21263 0.95004 0.86108 1.02565 1.92848 1.69619 1.57826 1.95453 1.23837 1.02572 0.97088 0.93602 1.23805 1.02094 0.90294 1.00969 1.23511 1.00032 0.76499 1.01010 0.92608 0.94410 0.91914 0.88978 0.84120 0.86255 0.86244 0.84329 0.89909 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.57 13.26 21.45 0.28 -51.29 15 2 C 0.02 1.00 5.46 84.66 0.46 1.46 15 3 Si 0.96 41.04 29.54 68.60 2.03 43.06 15 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 15 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 7 C -0.53 -27.03 8.82 25.60 0.23 -26.81 15 8 H 0.07 3.48 7.81 -2.91 -0.02 3.46 15 9 C 0.02 1.08 3.80 -11.12 -0.04 1.04 15 10 C 0.11 4.56 8.17 83.17 0.68 5.24 15 11 N -0.64 -27.18 3.68 -857.85 -3.16 -30.34 15 12 C 0.55 22.03 7.81 87.66 0.68 22.72 15 13 O -0.57 -24.93 17.08 -3.02 -0.05 -24.98 15 14 C -0.03 -0.90 3.68 -11.54 -0.04 -0.94 15 15 F -0.18 -6.41 15.57 44.97 0.70 -5.70 15 16 C -0.13 -2.94 10.22 30.62 0.31 -2.63 15 17 C -0.13 -3.07 10.03 30.62 0.31 -2.77 15 18 C 0.11 5.00 7.48 83.26 0.62 5.63 15 19 H 0.26 14.05 8.31 -92.71 -0.77 13.28 15 20 H 0.04 2.06 8.11 -2.39 -0.02 2.04 15 21 H 0.06 2.58 8.14 -2.38 -0.02 2.56 15 22 H 0.09 3.59 8.10 -2.39 -0.02 3.57 15 23 H 0.14 2.35 8.14 -2.38 -0.02 2.33 15 24 H 0.12 2.50 8.14 -2.39 -0.02 2.49 15 25 H 0.12 2.80 7.71 -2.39 -0.02 2.78 15 26 H 0.14 2.43 8.14 -2.39 -0.02 2.41 15 27 H 0.08 3.55 8.10 -2.39 -0.02 3.53 15 28 H 0.06 2.65 6.92 -2.39 -0.02 2.64 15 Total: -1.00 -61.66 253.56 4.17 -57.49 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.16 Total: 8.82 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 3.21 Total: 2.94 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.88 Total: -81.62 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.05 Total: -24.98 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.70 Total: -5.70 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -61.66 4.17 -57.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855471206.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.638 kcal (2) G-P(sol) polarization free energy of solvation -61.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds