Wall clock time and date at job start Mon Mar 30 2020 02:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.08999 * 109.46902 * 325.00006 * 10 9 7 12 12 C 1.52995 * 109.47009 * 85.00152 * 10 9 7 13 13 C 1.52995 * 109.47424 * 59.99993 * 12 10 9 14 14 C 1.52995 * 109.47147 * 59.99781 * 13 12 10 15 15 H 1.09002 * 109.47832 * 60.00115 * 14 13 12 16 16 C 1.50702 * 109.47565 * 180.02562 * 14 13 12 17 17 O 1.20826 * 120.00499 * 119.99673 * 16 14 13 18 18 O 1.34230 * 119.99733 * 300.00177 * 16 14 13 19 19 C 1.53007 * 109.47369 * 300.00200 * 14 13 12 20 20 C 1.52995 * 109.47149 * 59.99801 * 19 14 13 21 21 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 23 23 H 1.09007 * 109.46569 * 179.97438 * 12 10 9 24 24 H 1.09001 * 109.47135 * 299.99446 * 12 10 9 25 25 H 1.08998 * 109.46943 * 300.00073 * 13 12 10 26 26 H 1.09002 * 109.47406 * 179.97438 * 13 12 10 27 27 H 0.96701 * 116.99606 * 179.97438 * 18 16 14 28 28 H 1.09007 * 109.46612 * 300.00201 * 19 14 13 29 29 H 1.09001 * 109.47367 * 180.02562 * 19 14 13 30 30 H 1.08993 * 109.47282 * 180.02562 * 20 19 14 31 31 H 1.08998 * 109.46943 * 60.00043 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 1 3.5670 -3.2078 0.5794 12 6 4.2520 -2.9727 -1.4494 13 6 5.0170 -1.9387 -2.2779 14 6 6.4067 -1.7280 -1.6737 15 1 6.9517 -2.6719 -1.6778 16 6 7.1600 -0.7090 -2.4893 17 8 7.5452 0.3132 -1.9729 18 8 7.4029 -0.9369 -3.7896 19 6 6.2666 -1.2263 -0.2350 20 6 5.5017 -2.2603 0.5935 21 1 -0.4850 0.8402 -0.0004 22 1 3.8646 -0.3622 -0.0056 23 1 4.7974 -3.9165 -1.4535 24 1 3.2619 -3.1229 -1.8799 25 1 4.4721 -0.9947 -2.2737 26 1 5.1172 -2.2963 -3.3027 27 1 7.8893 -0.2541 -4.2716 28 1 5.7216 -0.2823 -0.2309 29 1 7.2567 -1.0758 0.1953 30 1 5.4016 -1.9028 1.6183 31 1 6.0466 -3.2043 0.5893 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885406800.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:32 Heat of formation + Delta-G solvation = -97.140515 kcal Electronic energy + Delta-G solvation = -14821.707224 eV Core-core repulsion = 12295.630213 eV Total energy + Delta-G solvation = -2526.077011 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.44506 -38.15418 -36.06360 -33.75284 -31.43469 -30.42028 -29.04594 -24.31737 -22.93369 -22.31864 -20.68462 -18.58303 -17.95284 -17.73222 -16.60031 -15.68459 -14.73855 -14.49616 -14.10784 -13.54567 -13.50293 -12.62393 -12.45903 -12.27020 -12.09222 -11.83801 -11.49109 -11.00555 -10.91041 -10.75331 -10.68156 -10.32864 -10.09162 -10.02107 -9.62043 -9.51910 -8.88026 -7.23789 -5.75385 -3.09894 2.28470 3.12107 3.39279 3.43884 3.47680 4.61060 4.81123 4.96862 5.09998 5.37536 5.48315 5.55235 5.59846 5.64621 5.81575 5.88063 5.91755 6.10614 6.22661 6.32097 6.49305 6.53446 6.62587 6.70840 6.82126 6.95117 7.94983 8.02302 8.44407 9.23555 9.96497 10.16509 11.43133 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031922 B = 0.010586 C = 0.009375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.916228 B = 2644.419005 C = 2985.922645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.005 3.995 3 Si 0.877 3.123 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.240 4.240 8 H 0.091 0.909 9 N -0.746 5.746 10 C 0.176 3.824 11 H 0.059 0.941 12 C -0.132 4.132 13 C -0.103 4.103 14 C -0.075 4.075 15 H 0.105 0.895 16 C 0.481 3.519 17 O -0.518 6.518 18 O -0.517 6.517 19 C -0.103 4.103 20 C -0.125 4.125 21 H 0.259 0.741 22 H 0.361 0.639 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.404 0.596 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.662 -4.960 -4.512 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.191 4.191 3 Si 0.708 3.292 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.066 3.934 11 H 0.077 0.923 12 C -0.172 4.172 13 C -0.141 4.141 14 C -0.095 4.095 15 H 0.123 0.877 16 C 0.324 3.676 17 O -0.406 6.406 18 O -0.328 6.328 19 C -0.141 4.141 20 C -0.163 4.163 21 H 0.069 0.931 22 H 0.195 0.805 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.262 0.738 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.294 -5.042 -4.129 15.709 hybrid contribution 0.897 1.823 -0.437 2.078 sum 15.191 -3.219 -4.566 16.185 Atomic orbital electron populations 1.69700 1.05054 1.25718 1.57806 1.24642 0.95172 0.97036 1.02237 0.86658 0.79361 0.85334 0.77870 1.21171 1.21692 1.20244 1.19094 0.80710 0.94617 1.42601 0.89138 1.42881 1.03900 1.02080 1.90176 1.20234 0.90507 0.89411 0.93225 0.92324 1.22130 1.00103 0.96320 0.98652 1.21426 0.91966 1.02110 0.98583 1.21156 0.97261 0.96533 0.94505 0.87743 1.23857 0.76349 0.87129 0.80254 1.90701 1.49541 1.28386 1.72008 1.84570 1.71647 1.52141 1.24490 1.21422 1.00789 1.00085 0.91798 1.21842 0.96700 0.98280 0.99448 0.93128 0.80525 0.93048 0.91006 0.90636 0.91714 0.73770 0.90939 0.91711 0.91215 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.39 13.97 55.49 0.78 -28.62 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 22.56 27.73 -169.99 -4.71 17.85 16 4 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 7 C -0.24 -6.66 10.41 -15.06 -0.16 -6.81 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.20 4.08 -53.42 -0.22 -17.41 16 10 C 0.18 3.19 3.10 -67.93 -0.21 2.98 16 11 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 12 C -0.13 -2.12 5.61 -26.74 -0.15 -2.27 16 13 C -0.10 -1.60 4.98 -26.74 -0.13 -1.73 16 14 C -0.08 -1.05 2.63 -91.77 -0.24 -1.29 16 15 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 16 C 0.48 6.96 7.63 36.01 0.27 7.23 16 17 O -0.52 -9.04 16.74 -18.75 -0.31 -9.36 16 18 O -0.52 -5.90 13.33 -39.26 -0.52 -6.43 16 19 C -0.10 -1.57 4.32 -26.73 -0.12 -1.69 16 20 C -0.12 -1.86 5.61 -26.73 -0.15 -2.01 16 21 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 22 H 0.36 8.41 3.93 -40.82 -0.16 8.25 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 25 H 0.07 1.41 7.60 -51.93 -0.39 1.01 16 26 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 27 H 0.40 2.86 9.10 45.56 0.41 3.28 16 28 H 0.07 1.32 6.46 -51.93 -0.34 0.98 16 29 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 254.83 15.07 3.84 3.84 Total: -1.00 -32.85 254.83 -5.57 -38.43 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.44 Total: 7.24 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -0.98 Total: -5.54 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.56 Total: -46.03 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.84 Total: -15.79 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.85 -5.57 -38.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885406800.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.715 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds