Wall clock time and date at job start Mon Mar 30 2020 02:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.08999 * 109.46902 * 325.00006 * 10 9 7 12 12 C 1.52995 * 109.47009 * 85.00152 * 10 9 7 13 13 C 1.52995 * 109.47424 * 59.99993 * 12 10 9 14 14 C 1.52995 * 109.47147 * 59.99781 * 13 12 10 15 15 H 1.09002 * 109.47832 * 60.00115 * 14 13 12 16 16 C 1.50702 * 109.47565 * 180.02562 * 14 13 12 17 17 O 1.20826 * 120.00499 * 119.99673 * 16 14 13 18 18 O 1.34230 * 119.99733 * 300.00177 * 16 14 13 19 19 C 1.53007 * 109.47369 * 300.00200 * 14 13 12 20 20 C 1.52995 * 109.47149 * 59.99801 * 19 14 13 21 21 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 23 23 H 1.09007 * 109.46569 * 179.97438 * 12 10 9 24 24 H 1.09001 * 109.47135 * 299.99446 * 12 10 9 25 25 H 1.08998 * 109.46943 * 300.00073 * 13 12 10 26 26 H 1.09002 * 109.47406 * 179.97438 * 13 12 10 27 27 H 0.96701 * 116.99606 * 179.97438 * 18 16 14 28 28 H 1.09007 * 109.46612 * 300.00201 * 19 14 13 29 29 H 1.09001 * 109.47367 * 180.02562 * 19 14 13 30 30 H 1.08993 * 109.47282 * 180.02562 * 20 19 14 31 31 H 1.08998 * 109.46943 * 60.00043 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 1 3.5670 -3.2078 0.5794 12 6 4.2520 -2.9727 -1.4494 13 6 5.0170 -1.9387 -2.2779 14 6 6.4067 -1.7280 -1.6737 15 1 6.9517 -2.6719 -1.6778 16 6 7.1600 -0.7090 -2.4893 17 8 7.5452 0.3132 -1.9729 18 8 7.4029 -0.9369 -3.7896 19 6 6.2666 -1.2263 -0.2350 20 6 5.5017 -2.2603 0.5935 21 1 -0.4850 0.8402 -0.0004 22 1 3.8646 -0.3622 -0.0056 23 1 4.7974 -3.9165 -1.4535 24 1 3.2619 -3.1229 -1.8799 25 1 4.4721 -0.9947 -2.2737 26 1 5.1172 -2.2963 -3.3027 27 1 7.8893 -0.2541 -4.2716 28 1 5.7216 -0.2823 -0.2309 29 1 7.2567 -1.0758 0.1953 30 1 5.4016 -1.9028 1.6183 31 1 6.0466 -3.2043 0.5893 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885406800.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:32 Heat of formation + Delta-G solvation = -120.603464 kcal Electronic energy + Delta-G solvation = -14822.724654 eV Core-core repulsion = 12295.630213 eV Total energy + Delta-G solvation = -2527.094441 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.56131 -39.46942 -37.11633 -35.56824 -33.31612 -31.65818 -30.68480 -25.82507 -24.69139 -23.54408 -21.86197 -19.95871 -19.83338 -18.98057 -17.71141 -16.91443 -16.54237 -16.00387 -15.57823 -15.16958 -14.66321 -14.41000 -14.02628 -13.70096 -13.36732 -13.05205 -12.97472 -12.60285 -12.48984 -12.31759 -12.07027 -11.85040 -11.80254 -11.40030 -11.36425 -10.93497 -10.83918 -9.25197 -8.01842 -5.31230 1.19524 1.33304 1.34287 1.40922 2.15868 2.45709 3.30219 3.67818 3.69205 3.83360 4.01964 4.31678 4.36029 4.50749 4.59721 4.65508 4.65977 4.87194 5.02370 5.12822 5.29234 5.30654 5.36428 5.47961 5.59317 5.65078 5.83171 6.24549 6.99844 7.11242 7.91183 8.07037 9.20334 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031922 B = 0.010586 C = 0.009375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.916228 B = 2644.419005 C = 2985.922645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.938 3.062 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.259 1.259 7 C -0.215 4.215 8 H 0.063 0.937 9 N -0.751 5.751 10 C 0.162 3.838 11 H 0.050 0.950 12 C -0.124 4.124 13 C -0.099 4.099 14 C -0.071 4.071 15 H 0.145 0.855 16 C 0.486 3.514 17 O -0.555 6.555 18 O -0.508 6.508 19 C -0.103 4.103 20 C -0.114 4.114 21 H 0.255 0.745 22 H 0.361 0.639 23 H 0.094 0.906 24 H 0.043 0.957 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.424 0.576 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.499 -5.996 -4.995 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.254 4.254 3 Si 0.767 3.233 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.184 1.184 7 C -0.346 4.346 8 H 0.081 0.919 9 N -0.395 5.395 10 C 0.054 3.946 11 H 0.068 0.932 12 C -0.164 4.164 13 C -0.136 4.136 14 C -0.090 4.090 15 H 0.163 0.837 16 C 0.330 3.670 17 O -0.446 6.446 18 O -0.321 6.321 19 C -0.140 4.140 20 C -0.152 4.152 21 H 0.064 0.936 22 H 0.195 0.805 23 H 0.113 0.887 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.286 0.714 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.196 -6.116 -4.637 18.831 hybrid contribution 0.050 2.010 -0.345 2.040 sum 17.246 -4.106 -4.982 18.415 Atomic orbital electron populations 1.69858 1.06787 1.26220 1.60733 1.25321 0.95901 1.00431 1.03769 0.85650 0.78661 0.81194 0.77750 1.21240 1.22167 1.18430 1.19108 0.82864 0.93289 1.39361 0.91864 1.42967 1.02265 1.04201 1.90039 1.20601 0.91997 0.87007 0.94973 0.93154 1.22004 0.99474 0.98386 0.96541 1.21335 0.92523 0.99940 0.99837 1.21146 0.96425 0.98137 0.93254 0.83725 1.23908 0.75692 0.86463 0.80953 1.90698 1.51236 1.29744 1.72906 1.84513 1.71534 1.52885 1.23206 1.21388 1.01027 0.98495 0.93132 1.21769 0.94560 1.00277 0.98553 0.93580 0.80541 0.88747 0.93842 0.94564 0.89776 0.71446 0.94533 0.90100 0.91854 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.89 13.97 21.65 0.30 -63.59 16 2 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.94 47.56 27.73 68.60 1.90 49.46 16 4 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 5 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 6 H -0.26 -12.22 6.52 99.48 0.65 -11.57 16 7 C -0.21 -12.14 10.41 84.03 0.87 -11.27 16 8 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 9 N -0.75 -34.39 4.08 -322.93 -1.32 -35.71 16 10 C 0.16 5.59 3.10 44.99 0.14 5.73 16 11 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 12 C -0.12 -3.68 5.61 30.59 0.17 -3.51 16 13 C -0.10 -2.81 4.98 30.59 0.15 -2.65 16 14 C -0.07 -1.70 2.63 -11.54 -0.03 -1.73 16 15 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 16 C 0.49 12.60 7.63 71.24 0.54 13.14 16 17 O -0.55 -18.29 16.74 21.96 0.37 -17.93 16 18 O -0.51 -9.82 13.33 -51.41 -0.69 -10.51 16 19 C -0.10 -2.83 4.32 30.59 0.13 -2.70 16 20 C -0.11 -3.00 5.61 30.59 0.17 -2.83 16 21 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 22 H 0.36 16.63 3.93 -92.71 -0.36 16.26 16 23 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 24 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.04 1.31 7.60 -2.39 -0.02 1.29 16 26 H 0.08 2.07 8.11 -2.39 -0.02 2.05 16 27 H 0.42 4.63 9.10 -74.06 -0.67 3.96 16 28 H 0.04 1.27 6.46 -2.38 -0.02 1.26 16 29 H 0.08 1.99 8.10 -2.39 -0.02 1.97 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -73.06 254.83 3.23 -69.83 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.04 Total: 17.57 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 2.62 Total: -9.13 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -1.02 Total: -99.30 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.32 Total: -28.43 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.90 Total: 49.46 kcal Total: -73.06 3.23 -69.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885406800.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.776 kcal (2) G-P(sol) polarization free energy of solvation -73.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds