Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00015 * 2 1 4 4 H 1.48502 * 109.47149 * 240.00496 * 3 2 1 5 5 H 1.48497 * 109.46931 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47195 * 120.00162 * 3 2 1 7 7 C 1.38809 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00288 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00193 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99859 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.61476 * 15.80153 * 10 9 7 12 12 C 1.55022 * 110.55247 * 138.59760 * 10 9 7 13 13 C 1.55061 * 102.11520 * 139.44344 * 12 10 9 14 14 O 1.44600 * 103.64667 * 323.48295 * 13 12 10 15 15 C 1.42817 * 106.77832 * 39.11525 * 14 13 12 16 16 C 1.54025 * 110.87278 * 95.65497 * 15 14 13 17 17 C 1.55171 * 101.89527 * 140.79381 * 16 15 14 18 18 O 1.44465 * 103.58806 * 323.60515 * 17 16 15 19 19 C 1.43981 * 107.00597 * 39.56765 * 18 17 16 20 20 H 0.97000 * 120.00029 * 359.97438 * 1 2 3 21 21 H 0.96998 * 119.99581 * 0.02562 * 9 7 2 22 22 H 1.09001 * 110.87480 * 257.59754 * 12 10 9 23 23 H 1.09001 * 110.87862 * 21.07677 * 12 10 9 24 24 H 1.08993 * 110.59470 * 82.02577 * 13 12 10 25 25 H 1.09007 * 110.58845 * 204.79665 * 13 12 10 26 26 H 1.08998 * 110.94558 * 258.93861 * 16 15 14 27 27 H 1.08993 * 110.94534 * 22.64113 * 16 15 14 28 28 H 1.08999 * 110.60240 * 82.12823 * 17 16 15 29 29 H 1.09001 * 110.59836 * 205.08175 * 17 16 15 30 30 H 1.09004 * 109.92352 * 214.36948 * 19 18 17 31 31 H 1.08995 * 109.92508 * 93.04339 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.1002 -3.4982 0.2773 12 6 1.3874 -4.6725 0.9594 13 6 1.4840 -5.9941 0.1541 14 8 1.2778 -5.5755 -1.2145 15 6 1.9637 -4.3330 -1.3734 16 6 3.3692 -4.5536 -1.9636 17 6 3.4977 -3.3549 -2.9405 18 8 2.1627 -3.2055 -3.4718 19 6 1.2484 -3.4264 -2.3817 20 1 -0.4850 0.8400 0.0004 21 1 0.3556 -2.3880 -0.0005 22 1 1.9413 -4.7466 1.8953 23 1 0.3479 -4.4027 1.1459 24 1 2.4695 -6.4442 0.2729 25 1 0.7056 -6.6906 0.4658 26 1 4.1307 -4.5051 -1.1852 27 1 3.4222 -5.5009 -2.5000 28 1 3.8005 -2.4548 -2.4055 29 1 4.2045 -3.5843 -3.7381 30 1 0.3462 -3.9168 -2.7472 31 1 0.9940 -2.4764 -1.9120 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885406949.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = -88.088940 kcal Electronic energy + Delta-G solvation = -15267.070966 eV Core-core repulsion = 12741.386461 eV Total energy + Delta-G solvation = -2525.684505 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.55594 -38.56274 -36.40109 -33.57718 -32.18149 -31.24191 -29.56921 -26.44943 -24.95879 -23.60407 -22.48439 -20.89009 -19.36745 -17.64188 -17.36242 -16.91145 -16.40220 -16.02493 -15.74730 -15.27868 -14.88612 -14.53487 -13.89360 -13.70853 -13.29114 -12.87044 -12.67045 -12.57301 -12.42540 -12.19869 -12.12097 -11.84302 -11.67875 -11.54572 -11.05903 -10.68265 -10.29674 -9.00878 -7.96962 -5.27137 1.47828 1.50214 1.55475 2.53768 2.92775 3.06072 3.37521 3.56017 3.75563 3.98708 4.05081 4.10810 4.31704 4.34176 4.43109 4.62588 4.64022 4.74964 4.87370 4.91953 4.93598 5.04738 5.14558 5.23223 5.31887 5.50694 5.96753 6.08796 6.23048 7.30196 7.98296 8.23060 9.25311 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033671 B = 0.011631 C = 0.009913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.364249 B = 2406.865380 C = 2823.837488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.066 4.066 3 Si 0.967 3.033 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.714 5.714 10 C 0.151 3.849 11 H 0.083 0.917 12 C -0.163 4.163 13 C 0.047 3.953 14 O -0.383 6.383 15 C 0.051 3.949 16 C -0.154 4.154 17 C 0.045 3.955 18 O -0.405 6.405 19 C 0.041 3.959 20 H 0.252 0.748 21 H 0.375 0.625 22 H 0.096 0.904 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.072 -10.612 0.064 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.259 4.259 3 Si 0.796 3.204 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.352 5.352 10 C 0.040 3.960 11 H 0.101 0.899 12 C -0.202 4.202 13 C -0.029 4.029 14 O -0.302 6.302 15 C 0.008 3.992 16 C -0.192 4.192 17 C -0.031 4.031 18 O -0.325 6.325 19 C -0.036 4.036 20 H 0.060 0.940 21 H 0.208 0.792 22 H 0.115 0.885 23 H 0.081 0.919 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.118 0.882 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.029 -10.513 -0.287 12.649 hybrid contribution -0.222 1.175 0.281 1.228 sum 6.807 -9.337 -0.007 11.555 Atomic orbital electron populations 1.69794 1.06586 1.26240 1.58850 1.25494 0.96214 1.00930 1.03268 0.85313 0.77321 0.79555 0.78196 1.20593 1.22530 1.20091 1.19544 0.91455 0.84687 1.41827 0.90198 1.42635 1.05438 1.00641 1.86485 1.21782 0.96883 0.85902 0.91407 0.89873 1.23547 1.01717 0.95225 0.99729 1.23715 1.02859 0.96030 0.80285 1.88746 1.74173 1.36866 1.30437 1.23472 0.92018 0.84910 0.98803 1.23424 0.96187 0.99576 0.99968 1.23637 0.84778 0.97060 0.97593 1.88788 1.17159 1.92957 1.33570 1.23528 0.92231 1.00871 0.86968 0.93956 0.79181 0.88548 0.91942 0.90068 0.87471 0.88197 0.89338 0.92966 0.86875 0.91803 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.63 13.06 21.65 0.28 -57.34 16 2 C -0.07 -3.66 5.50 84.86 0.47 -3.20 16 3 Si 0.97 45.03 29.55 68.60 2.03 47.06 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.24 -12.76 9.45 84.03 0.79 -11.97 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 9 N -0.71 -34.03 2.95 -319.14 -0.94 -34.97 16 10 C 0.15 5.63 3.40 45.79 0.16 5.79 16 11 H 0.08 2.95 7.05 -2.39 -0.02 2.94 16 12 C -0.16 -4.99 6.89 31.99 0.22 -4.77 16 13 C 0.05 1.23 7.73 72.69 0.56 1.79 16 14 O -0.38 -13.18 10.83 -148.98 -1.61 -14.80 16 15 C 0.05 1.84 1.09 -10.24 -0.01 1.83 16 16 C -0.15 -4.59 6.44 31.69 0.20 -4.38 16 17 C 0.05 1.51 7.73 72.73 0.56 2.07 16 18 O -0.41 -17.06 11.54 -148.98 -1.72 -18.78 16 19 C 0.04 1.77 7.06 72.08 0.51 2.28 16 20 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 21 H 0.38 19.72 7.64 -92.71 -0.71 19.01 16 22 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 23 H 0.06 2.12 7.95 -2.39 -0.02 2.10 16 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.11 2.32 8.14 -2.38 -0.02 2.31 16 26 H 0.10 2.51 7.36 -2.39 -0.02 2.49 16 27 H 0.09 2.43 8.10 -2.39 -0.02 2.41 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.06 2.76 7.99 -2.38 -0.02 2.74 16 31 H 0.09 4.63 5.10 -2.39 -0.01 4.62 16 Total: -1.00 -62.79 252.49 1.92 -60.88 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.42 Total: 28.51 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 3.46 Total: -10.56 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -0.66 Total: -92.32 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -3.33 Total: -33.57 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -62.79 1.92 -60.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885406949.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.212 kcal (2) G-P(sol) polarization free energy of solvation -62.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds