Wall clock time and date at job start Mon Mar 30 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48503 * 109.47326 * 270.00173 * 3 2 1 5 5 H 1.48506 * 109.47237 * 30.00118 * 3 2 1 6 6 H 1.48500 * 109.47149 * 150.00088 * 3 2 1 7 7 C 1.38811 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00202 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99929 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.52556 * 34.29491 * 10 9 7 12 12 C 1.54804 * 110.58632 * 271.49691 * 10 9 7 13 13 C 1.54574 * 104.05197 * 240.38494 * 12 10 9 14 14 O 1.44687 * 105.06530 * 23.52047 * 13 12 10 15 15 C 1.42887 * 105.23139 * 321.32518 * 14 13 12 16 16 C 1.54016 * 111.53394 * 277.00956 * 15 14 13 17 17 C 1.55178 * 100.80248 * 271.95169 * 16 15 14 18 18 O 1.43778 * 105.26722 * 324.80546 * 17 16 15 19 19 C 1.43574 * 109.91108 * 24.20041 * 18 17 16 20 20 H 0.97005 * 120.00144 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00043 * 359.97438 * 9 7 2 22 22 H 1.09001 * 110.51042 * 359.02569 * 12 10 9 23 23 H 1.08996 * 110.51526 * 121.60702 * 12 10 9 24 24 H 1.09006 * 110.32251 * 142.41843 * 13 12 10 25 25 H 1.08995 * 110.32254 * 264.51636 * 13 12 10 26 26 H 1.09002 * 111.15038 * 29.84104 * 16 15 14 27 27 H 1.09002 * 111.15037 * 154.06254 * 16 15 14 28 28 H 1.08994 * 110.28557 * 205.85876 * 17 16 15 29 29 H 1.08998 * 110.27959 * 83.74932 * 17 16 15 30 30 H 1.08996 * 109.89059 * 238.00591 * 19 18 17 31 31 H 1.09003 * 110.02654 * 116.89848 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9790 -3.5664 0.5743 12 6 2.3641 -4.1086 -1.4503 13 6 1.6505 -5.4739 -1.5762 14 8 0.6063 -5.4463 -0.5750 15 6 1.1849 -4.7866 0.5526 16 6 2.0125 -5.7593 1.4134 17 6 0.9183 -6.3056 2.3685 18 8 0.0349 -5.1963 2.6062 19 6 0.1223 -4.2605 1.5208 20 1 -0.4850 0.8401 0.0004 21 1 0.3555 -2.3880 -0.0016 22 1 1.9552 -3.3963 -2.1669 23 1 3.4383 -4.2218 -1.5962 24 1 1.2185 -5.5850 -2.5709 25 1 2.3489 -6.2861 -1.3748 26 1 2.4384 -6.5576 0.8056 27 1 2.7895 -5.2315 1.9664 28 1 1.3660 -6.6393 3.3046 29 1 0.3774 -7.1245 1.8943 30 1 0.4168 -3.2813 1.8982 31 1 -0.8391 -4.1878 1.0123 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885406950.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:06 Heat of formation + Delta-G solvation = -72.173311 kcal Electronic energy + Delta-G solvation = -15067.252548 eV Core-core repulsion = 12542.258196 eV Total energy + Delta-G solvation = -2524.994352 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.30180 -37.25604 -34.50783 -31.77536 -30.85016 -29.81940 -28.32670 -24.88732 -23.34267 -22.38201 -20.73784 -19.61135 -17.42236 -16.53567 -15.82089 -15.22089 -15.13838 -14.59791 -14.21068 -13.66338 -13.40662 -13.05420 -12.46989 -12.16827 -11.68894 -11.46889 -11.20883 -11.12002 -10.89203 -10.74516 -10.45479 -10.31347 -10.04048 -9.73600 -9.39317 -9.12512 -8.95386 -7.06767 -5.83985 -3.15146 3.39565 3.44779 3.46768 4.11145 4.28822 4.50253 4.77436 5.07410 5.13831 5.31292 5.39609 5.44920 5.53873 5.63959 5.82213 5.87261 5.92187 5.99335 6.12295 6.15768 6.24460 6.31696 6.49206 6.62668 6.79216 7.26078 7.38509 7.63552 8.32912 9.44713 9.97806 10.33503 11.37870 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038888 B = 0.009658 C = 0.008638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.839246 B = 2898.485657 C = 3240.767631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.249 4.249 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.165 3.835 11 H 0.067 0.933 12 C -0.181 4.181 13 C 0.045 3.955 14 O -0.358 6.358 15 C 0.062 3.938 16 C -0.169 4.169 17 C 0.056 3.944 18 O -0.389 6.389 19 C 0.064 3.936 20 H 0.257 0.743 21 H 0.388 0.612 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 -11.301 0.507 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.379 4.379 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.053 3.947 11 H 0.085 0.915 12 C -0.222 4.222 13 C -0.031 4.031 14 O -0.277 6.277 15 C 0.021 3.979 16 C -0.207 4.207 17 C -0.020 4.020 18 O -0.308 6.308 19 C -0.012 4.012 20 H 0.067 0.933 21 H 0.223 0.777 22 H 0.102 0.898 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.199 -11.181 0.686 11.963 hybrid contribution 0.552 0.899 -0.447 1.146 sum 4.751 -10.282 0.238 11.329 Atomic orbital electron populations 1.69663 1.05128 1.25953 1.56780 1.24773 0.95524 0.97794 1.02414 0.86175 0.78674 0.83681 0.77520 1.21675 1.21669 1.20686 1.19218 0.91047 0.83842 1.43821 0.91022 1.42496 1.05930 0.99313 1.87899 1.21284 0.94279 0.86218 0.92872 0.91506 1.23847 0.99835 0.96590 1.01879 1.23414 0.90099 0.97167 0.92468 1.88934 1.35664 1.78828 1.24262 1.23103 0.94121 0.92477 0.88208 1.23537 0.98709 0.99866 0.98602 1.23316 0.90149 0.89996 0.98585 1.88458 1.64469 1.33408 1.44481 1.23144 0.98478 0.93539 0.86014 0.93277 0.77666 0.89782 0.91705 0.89835 0.93137 0.89874 0.89409 0.90274 0.92474 0.87397 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.55 4.03 -52.42 -0.21 -17.76 16 10 C 0.17 3.26 3.17 -66.89 -0.21 3.05 16 11 H 0.07 1.30 7.53 -51.93 -0.39 0.90 16 12 C -0.18 -3.15 6.90 -24.95 -0.17 -3.32 16 13 C 0.05 0.70 7.35 37.98 0.28 0.97 16 14 O -0.36 -6.57 11.12 -35.23 -0.39 -6.96 16 15 C 0.06 1.12 0.85 -89.96 -0.08 1.04 16 16 C -0.17 -2.46 6.18 -25.05 -0.15 -2.62 16 17 C 0.06 0.83 7.79 38.31 0.30 1.12 16 18 O -0.39 -7.24 11.38 -35.23 -0.40 -7.64 16 19 C 0.06 1.27 6.06 37.20 0.23 1.49 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.39 10.24 6.65 -40.82 -0.27 9.97 16 22 H 0.08 1.66 7.97 -51.93 -0.41 1.25 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 26 H 0.08 1.05 7.35 -51.93 -0.38 0.67 16 27 H 0.09 1.22 7.72 -51.93 -0.40 0.82 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.11 2.35 6.86 -51.93 -0.36 2.00 16 31 H 0.08 1.53 8.07 -51.93 -0.42 1.11 16 LS Contribution 252.62 15.07 3.81 3.81 Total: -1.00 -29.81 252.62 -5.82 -35.63 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -4.26 Total: 8.24 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -0.06 Total: -5.44 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.51 Total: -44.59 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.79 Total: -14.60 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.81 -5.82 -35.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885406950.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.548 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds